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edu.duke.* |
edu.duke.cs.banjo.learner.Searcher | ||
protected final double |
unreachableScore |
1.0d |
edu.duke.cs.banjo.learner.components.EvaluatorBDe | ||
protected final double |
scoreDiff |
5.0E-7d |
protected final double |
unreachableBDeScore |
1.0d |
edu.duke.cs.banjo.learner.components.ProposerRandomLocalMove | ||
final int |
markovLagZero |
0 |
edu.duke.cs.banjo.utility.BANJO | ||
public static final java.lang.String |
APPLICATION_NAME |
"Banjo" |
public static final java.lang.String |
APPLICATION_NAME_LONG |
"Bayesian Network Inference with Java Objects" |
public static final java.lang.String |
APPLICATION_VERSIONDATE |
"15 Apr 2008" |
public static final java.lang.String |
APPLICATION_VERSIONDESCRIPTION |
"Public Release 2.2" |
public static final java.lang.String |
APPLICATION_VERSIONNUMBER |
"2.2.0" |
public static final int |
BANJO_EQUIVALENTSAMPLESIZE_INVALIDVALUE |
-1 |
public static final java.lang.String |
BANJO_FREEFORMINPUT |
"freeFormInput" |
public static final double |
BANJO_INITIALTHRESHOLDSCORE_BDE |
0.0d |
public static final double |
BANJO_LARGEINITIALVALUEFORMINIMUM |
1.0E8d |
public static final java.lang.String |
BANJO_NOVALUE_INDISPLAY |
"" |
public static final int |
BANJO_NOVALUESUPPLIED_NUMBER |
-1 |
public static final java.lang.String |
BANJO_NOVALUESUPPLIED_STRING |
"noValueSuppliedByUser" |
public static final int |
BANJO_OBSERVATIONCOUNT_NONUMBERSUPPLIED |
-1 |
public static final double |
BANJO_SMALLINITIALVALUEFORMAXIMUM |
-1.0E8d |
public static final int |
BANJO_SYSTEM_ENTER |
13 |
public static final int |
BANJO_SYSTEM_NL |
10 |
public static final java.lang.String |
BANJO_TIMEQUALIFIER_DAYS |
"d" |
public static final java.lang.String |
BANJO_TIMEQUALIFIER_HOURS |
"h" |
public static final java.lang.String |
BANJO_TIMEQUALIFIER_MILLISECS |
"ms" |
public static final java.lang.String |
BANJO_TIMEQUALIFIER_MINUTES |
"m" |
public static final java.lang.String |
BANJO_TIMEQUALIFIER_SECONDS |
"s" |
public static final double |
BANJO_UNREACHABLESCORE_BDE |
1.0d |
public static final java.lang.String |
BANJOVERSION |
"Banjo Version" |
public static final int |
BUFFERLENGTH_SMALL |
100 |
public static final int |
BUFFERLENGTH_STAT |
10000 |
public static final int |
BUFFERLENGTH_STAT_INTERNAL |
2000 |
public static final int |
BUFFERLENGTH_STRUCTURE |
1000 |
public static final int |
BUFFERLENGTH_STRUCTURE_LARGE |
30000 |
public static final int |
CHANGESTATUS_APPLIED |
2 |
public static final int |
CHANGESTATUS_NONE |
0 |
public static final int |
CHANGESTATUS_READY |
1 |
public static final int |
CHANGESTATUS_UNDONE |
3 |
public static final int |
CHANGETYPE_ADDITION |
1 |
public static final int |
CHANGETYPE_COUNT |
3 |
public static final int |
CHANGETYPE_DELETION |
2 |
public static final int |
CHANGETYPE_NONE |
0 |
public static final int |
CHANGETYPE_REVERSAL |
3 |
public static final java.lang.String |
CONFIG_CYCLECHECKER_ACTIONORDER |
"cycleCheckerOrderOfAction" |
public static final java.lang.String |
CONFIG_CYCLECHECKER_METHOD |
"cycleCheckingMethod" |
public static final java.lang.String |
CONFIG_CYCLECHECKINGMETHOD_DESCR |
"cycle checking method" |
public static final java.lang.String |
CONFIG_CYCLECHECKINGMETHOD_DISP |
"Cycle checking method:" |
public static final int |
CONFIG_DISCRETIZATIONSTARTINDEX |
0 |
public static final boolean |
CONFIG_DISPLAYCOLLISIONS |
false |
public static final boolean |
CONFIG_DISPLAYITERATIONRESTARTS |
false |
public static final boolean |
CONFIG_DISPLAYPROGRESS |
false |
public static final boolean |
CONFIG_DISPLAYSTATISTICS |
true |
public static final boolean |
CONFIG_DISPLAYSTATISTICS_EQUIVCHECK |
true |
public static final boolean |
CONFIG_ECHOERROROUTPUTTOCMDLINE |
true |
public static final boolean |
CONFIG_ECHOOUTPUTTOCMDLINE |
true |
public static final boolean |
CONFIG_FINALTIMEDISPLAY |
false |
public static final int |
CONFIG_MAXVALUECOUNT |
7 |
public static final java.lang.String |
CONFIG_OBSERVATIONS |
"compactObservations" |
public static final boolean |
CONFIG_OMITREVERSALS |
false |
public static final java.lang.String |
CONFIG_PARENTSETS |
"parentSetsAsArrays" |
public static final int |
CONFIG_TRACEFILE_1 |
1 |
public static final int |
CONFIG_TRACEFILE_2 |
2 |
public static final int |
CONFIG_TRACEFILE_3 |
3 |
public static final java.lang.String |
DATA_BANJOSEED |
"seedForStartingSearch" |
public static final java.lang.String |
DATA_BANJOXMLFORMATVERSION |
"1.0" |
public static final java.lang.String |
DATA_BANJOXMLFORMATVERSION_1 |
"1.0" |
public static final java.lang.String |
DATA_BANJOXMLFORMATVERSION_DISP |
"Banjo XML format version:" |
public static final java.lang.String |
DATA_BANJOXMLTAG_BANJODATA |
"BanjoData" |
public static final java.lang.String |
DATA_BANJOXMLTAG_BANJOSETTINGS |
"BanjoSettings" |
public static final java.lang.String |
DATA_BANJOXMLTAG_BANJOXMLFORMATVERSION |
"BanjoXMLformatVersion" |
public static final java.lang.String |
DATA_BANJOXMLTAG_MAXMARKOVLAG |
"maxMarkovLag" |
public static final java.lang.String |
DATA_BANJOXMLTAG_MINMARKOVLAG |
"minMarkovLag" |
public static final java.lang.String |
DATA_BANJOXMLTAG_NBESTNETWORKS |
"nBestNetworks" |
public static final java.lang.String |
DATA_BANJOXMLTAG_NETWORK |
"network" |
public static final java.lang.String |
DATA_BANJOXMLTAG_NETWORKSCORE |
"networkScore" |
public static final java.lang.String |
DATA_BANJOXMLTAG_NETWORKSTRUCTURE |
"networkStructure" |
public static final java.lang.String |
DATA_BANJOXMLTAG_VARCOUNT |
"variableCount" |
public static final java.lang.String |
DATA_BANJOXMLTAG_XMLVERSION |
"" |
public static final java.lang.String |
DATA_CONSENSUSGRAPHASHTML |
"consensusGraphAsHTML" |
public static final java.lang.String |
DATA_CURRENTTEMPERATURE |
"currentTemperature" |
public static final java.lang.String |
DATA_CYCLECHECKER_APPLYTHENCHECK |
"applyThenCheck" |
public static final java.lang.String |
DATA_CYCLECHECKER_CHECKTHENAPPLY |
"checkThenApply" |
public static final java.lang.String |
DATA_CYCLECHECKING_BFS |
"BFS" |
public static final java.lang.String |
DATA_CYCLECHECKING_BFS_DESCR |
"breadth-first search" |
public static final java.lang.String |
DATA_CYCLECHECKING_BFS_DISP |
"Breadth-first search" |
public static final java.lang.String |
DATA_CYCLECHECKING_CHECKFORCYCLES |
"checkForCycles" |
public static final java.lang.String |
DATA_CYCLECHECKING_DFS |
"DFS" |
public static final java.lang.String |
DATA_CYCLECHECKING_DFS_DESCR |
"depth-first search" |
public static final java.lang.String |
DATA_CYCLECHECKING_DFS_DISP |
"Depth-first Search" |
public static final java.lang.String |
DATA_CYCLECHECKING_DFSORIG |
"DFSORIG" |
public static final java.lang.String |
DATA_CYCLECHECKING_DFSORIG_DESCR |
"depth-first search (from version 1.0)" |
public static final java.lang.String |
DATA_CYCLECHECKING_DFSORIG_DISP |
"Depth-first Search (from version 1.0)" |
public static final java.lang.String |
DATA_CYCLECHECKING_NOCHECKING |
"noCycleChecking" |
public static final java.lang.String |
DATA_CYCLECHECKING_SHMUELI |
"DFSwithShmueli" |
public static final java.lang.String |
DATA_CYCLECHECKING_SHMUELI_DESCR |
"depth-first search with Shmueli optimization" |
public static final java.lang.String |
DATA_CYCLECHECKING_SHMUELI_DISP |
"Depth-first Search with Shmueli Optimization" |
public static final java.lang.String |
DATA_CYCLECHECKING_TREATASPLAINNODES |
"treatAsPlainNodes" |
public static final int |
DATA_DEFAULT_FASTCACHELEVEL |
0 |
public static final java.lang.String |
DATA_DEFAULTDISCRETIZATIONCHOICE |
"defaultDiscretizationChoice" |
public static final java.lang.String |
DATA_DEFAULTDISCRETIZATIONPOINTS |
"defaultDiscretizationPoints" |
public static final java.lang.String |
DATA_DISCRETIZATIONEXCEPTION_POINTSLIST |
"discretizationExceptionPointsList" |
public static final java.lang.String |
DATA_DISCRETIZATIONEXCEPTION_TYPELIST |
"discretizationExceptionTypeList" |
public static final java.lang.String |
DATA_DISCRETIZATIONREPORT |
"discretizationReport" |
public static final java.lang.String |
DATA_ELAPSEDTIME |
"elapsedTime" |
public static final int |
DATA_FASTCACHELEVEL0 |
0 |
public static final int |
DATA_FASTCACHELEVEL1 |
1 |
public static final int |
DATA_FASTCACHELEVEL2 |
2 |
public static final java.lang.String |
DATA_FILE_BESTNETWORK_GRAPHICS |
"fileBestNetworkGraphics" |
public static final java.lang.String |
DATA_FILE_BESTNETWORK_STRUCTURE |
"fileBestNetworkStructure" |
public static final java.lang.String |
DATA_FILE_CONSENSUSGRAPH_GRAPHICS |
"fileConsensusGraphGraphics" |
public static final java.lang.String |
DATA_FILE_CONSENSUSGRAPH_STRUCTURE |
"fileConsensusGraphStructure" |
public static final java.lang.String |
DATA_FILE_CONSENSUSGRAPHASHTML |
"consensusGraphAsHtmlFile" |
public static final java.lang.String |
DATA_FILE_INFLUENCESCORES |
"influenceScoresFile" |
public static final java.lang.String |
DATA_FINALREPORT |
"Final report" |
public static final java.lang.String |
DATA_GLOBALHIGHSCORE |
"globalHighScore" |
public static final java.lang.String |
DATA_GLOBALHIGHSCORESTRUCTURE |
"globalHighScoreStructure" |
public static final java.lang.String |
DATA_INITIALSTRUCTURE |
"initialStructure" |
public static final java.lang.String |
DATA_INITIALSTRUCTURE_DISP |
"Initial structure, as loaded:" |
public static final java.lang.String |
DATA_MAXMARKOVLAG_TOKEN |
"@maxMarkovLag@" |
public static final java.lang.String |
DATA_MAXMARKOVLAG_TOKEN_ALT0 |
"@maxML@" |
public static final java.lang.String |
DATA_MAXTHREADS |
"maxThreads" |
public static final java.lang.String |
DATA_MEMORYINFO |
"Memory info:" |
public static final java.lang.String |
DATA_MEMORYINFOATFINISH |
"Memory info after completing the search:" |
public static final java.lang.String |
DATA_MEMORYINFOBEFORESTART |
"Memory info before starting the search:" |
public static final java.lang.String |
DATA_MINMARKOVLAG_TOKEN |
"@minMarkovLag@" |
public static final java.lang.String |
DATA_MINMARKOVLAG_TOKEN_ALT0 |
"@minML@" |
public static final java.lang.String |
DATA_MUSTBEABSENTPARENTS |
"mustBeAbsentParents" |
public static final java.lang.String |
DATA_MUSTBEABSENTPARENTS_DISP |
"\'Must not be present\' edges, as loaded:" |
public static final java.lang.String |
DATA_MUSTBEPRESENTPARENTS |
"mustBePresentParents" |
public static final java.lang.String |
DATA_MUSTBEPRESENTPARENTS_DISP |
"\'Must be present\' edges, as loaded:" |
public static final java.lang.String |
DATA_NBEST_NEWLINE |
"\n" |
public static final java.lang.String |
DATA_NETWORKSVISITEDGLOBALCOUNTER |
"networksVisitedGlobalCounter" |
public static final int |
DATA_NOFASTCACHE |
-1 |
public static final java.lang.String |
DATA_OBSERVATIONCOUNT |
"observationCount" |
public static final java.lang.String |
DATA_OBSERVATIONCOUNT_DESCR |
"Observation count" |
public static final java.lang.String |
DATA_OBSERVATIONCOUNT_DISP |
"Observation count:" |
public static final java.lang.String |
DATA_OBSERVATIONCOUNT_EFFECTIVE_DISP |
"Number of observations used for learning the network:" |
public static final java.lang.String |
DATA_OBSERVATIONCOUNT_EFFECTIVE_DISP_DBN |
"Number of observations used for learning DBN:" |
public static final java.lang.String |
DATA_OBSERVEDOBSERVATIONCOUNT |
"observedObservationCount" |
public static final java.lang.String |
DATA_OBSERVEDOBSERVATIONCOUNT_DESCR |
"Observed observation count" |
public static final java.lang.String |
DATA_OBSERVEDOBSERVATIONCOUNT_DISP |
"Number of observations:" |
public static final java.lang.String |
DATA_OBSERVEDOBSERVATIONROWCOUNT |
"observedObservationRowCount" |
public static final java.lang.String |
DATA_OBSERVEDOBSERVATIONROWCOUNT_DISP |
"Number of observations (in file):" |
public static final java.lang.String |
DATA_OBSERVEDOBSERVATIONROWCOUNT_DISP_PL |
"Number of observations (in files):" |
public static final char |
DATA_OMITFILE_IDENTIFIER |
45 |
public static final java.lang.String |
DATA_OMITTEDWILDCARDOBSERVATIONSFILES |
"omittedWildcardObservationsFiles" |
public static final java.lang.String |
DATA_OMITTEDWILDCARDOBSERVATIONSFILES_DESCR |
"Omitted wildcard observations files" |
public static final java.lang.String |
DATA_OMITTEDWILDCARDXMLFILES |
"omittedWildcardXMLFiles" |
public static final java.lang.String |
DATA_OMITTEDWILDCARDXMLFILES_DESCR |
"Omitted wildcard XML files" |
public static final java.lang.String |
DATA_PROPOSEDNETWORKS |
"proposedNetworks" |
public static final java.lang.String |
DATA_REPORTFILE |
"reportFile" |
public static final java.lang.String |
DATA_RESTARTWITHINITALNETWORK_DISP |
"use initial network" |
public static final java.lang.String |
DATA_RESTARTWITHRANDOMNETWORK_DISP |
"use random network" |
public static final java.lang.String |
DATA_SEARCHDATA |
"Banjo search data:" |
public static final boolean |
DATA_SEARCHER_OMITTIMEDISPLAY |
true |
public static final java.lang.String |
DATA_SEARCHERINFO_COREOBJECTS |
"SearcherInfoCoreObjects" |
public static final java.lang.String |
DATA_SEARCHERINFO_FEEDBACK_1 |
"SearcherInfoFeedback" |
public static final java.lang.String |
DATA_SEARCHERINFO_FEEDBACK_2 |
"SearcherInfoFeedback2" |
public static final java.lang.String |
DATA_SEARCHERINFO_SPECIFICSEARCHER |
"InfoForSpecificSearcher" |
public static final java.lang.String |
DATA_SEARCHERINFO_STATISTICS |
"SearcherInfoStatistics" |
public static final java.lang.String |
DATA_SEARCHSTATISTICS |
"Search Statistics" |
public static final java.lang.String |
DATA_SEPARATORBACKWARDSLASH |
"\\" |
public static final java.lang.String |
DATA_SEPARATORCOLON |
":" |
public static final java.lang.String |
DATA_SEPARATORFORWARDSLASH |
"/" |
public static final java.lang.String |
DATA_SETTINGDEFAULTVALUE_EMPTY |
"" |
public static final java.lang.String |
DATA_SETTINGINVALIDVALUE |
"invalid setting value" |
public static final java.lang.String |
DATA_SETTINGNODEFAULTVALUE |
"no value found" |
public static final java.lang.String |
DATA_SETTINGNOTFOUND |
"setting not found" |
public static final java.lang.String |
DATA_SETTINGNOVALUEPROVIDED |
"no value provided" |
public static final java.lang.String |
DATA_SETTINGSDIRECTORYFORDEFAULTVALUES |
"data" |
public static final java.lang.String |
DATA_SETTINGSFILEFORDEFAULTVALUES |
"banjo.cfg" |
public static final java.lang.String |
DATA_SPECIFIEDOBSERVATIONCOUNT |
"specifiedObservationCount" |
public static final java.lang.String |
DATA_SPECIFIEDOBSERVATIONCOUNT_DESCR |
"Number of observation specified to be used" |
public static final java.lang.String |
DATA_SPECIFIEDOBSERVATIONCOUNT_DISP |
"Number of observations specified to be used:" |
public static final java.lang.String |
DATA_SPECIFIEDSETTINGSFILE |
"specifiedSettingsFile" |
public static final java.lang.String |
DATA_SPECIFIEDSETTINGSFILEDIRECTORY |
"specifiedSettingsFileDirectory" |
public static final java.lang.String |
DATA_THREAD_FILEIDENTIFIER |
"thread=" |
public static final java.lang.String |
DATA_THREADID_TOKEN |
"@threadID@" |
public static final java.lang.String |
DATA_THREADID_TOKEN_ALT0 |
"@thID@" |
public static final java.lang.String |
DATA_THREADINDEX |
"threadIndex" |
public static final java.lang.String |
DATA_THREADINDEX_DISP |
"Index of current thread:" |
public static final java.lang.String |
DATA_THREADNAME |
"Banjo thread #" |
public static final java.lang.String |
DATA_TIMESTAMP_TOKEN |
"@timestamp@" |
public static final java.lang.String |
DATA_TIMESTAMP_TOKEN_ALT0 |
"@time stamp@" |
public static final java.lang.String |
DATA_TIMESTAMP_TOKEN_ALT1 |
"@time_stamp@" |
public static final java.lang.String |
DATA_TIMESTAMP_TOKEN_ALT2 |
"@ts@" |
public static final java.lang.String |
DATA_TIMESTAMP_TOKEN_ALT3 |
"@TS@" |
public static final java.lang.String |
DATA_TOTALTIMEFORPREP |
"totalTimeForPrep" |
public static final java.lang.String |
DATA_TOTALTIMEFORSEARCH |
"totalTimeForSearch" |
public static final java.lang.String |
DATA_TRACEMEMORYANNEALEREND |
"Memory info at Annealer end:" |
public static final java.lang.String |
DATA_TRACEMEMORYANNEALERSTART |
"Memory info at Annealer start:" |
public static final java.lang.String |
DATA_TRACEMEMORYBNMBEFOREINITIALSTRUCT |
"Memory info before initial structure:" |
public static final java.lang.String |
DATA_TRACEMEMORYBNMBEFORENODECACHE |
"Memory info before node cache:" |
public static final java.lang.String |
DATA_TRACEMEMORYBNMEND |
"Memory info at BNM end:" |
public static final java.lang.String |
DATA_TRACEMEMORYBNMSTART |
"Memory info at BNM start:" |
public static final java.lang.String |
DATA_TRACEMEMORYLOADINGOBSERVATIONS |
" Memory info before loading observations:" |
public static final java.lang.String |
DATA_TRACEMEMORYLOADINGOBSERVATIONSCOMPLETED |
" Memory info after loading observations:" |
public static final java.lang.String |
DATA_TRACEMEMORYLOADINGOBSERVATIONSINPROGRESS |
" Memory info during loading of observations:" |
public static final java.lang.String |
DATA_TRACEMEMORYOBSERVATIONSTAGING |
" Memory info before releasing staging objects:" |
public static final java.lang.String |
DATA_TRACEMEMORYOBSERVATIONSTAGINGRELEASED |
" Memory info after releasing staging objects:" |
public static final java.lang.String |
DATA_TRACEMEMORYSEARCHEREND |
"Memory info at Searcher end:" |
public static final java.lang.String |
DATA_TRACEMEMORYSEARCHERSTART |
"Memory info at Searcher start:" |
public static final java.lang.String |
DATA_USEBASICCACHE |
"useBasicCache" |
public static final java.lang.String |
DATA_USEFASTCACHELEVEL |
"useFastCacheLevel" |
public static final java.lang.String |
DATA_VARCOUNT_TOKEN |
"@varCount@" |
public static final java.lang.String |
DATA_VARCOUNT_TOKEN_ALT0 |
"@varC@" |
public static final java.lang.String |
DATA_VARIABLENAMES |
"variableNamesAsAssigned" |
public static final java.lang.String |
DATA_VARIABLENAMESCHOICE |
"variableNamesChoice" |
public static final java.lang.String |
DATA_WILDCARDOBSERVATIONSFILES |
"wildcardObservationsFiles" |
public static final java.lang.String |
DATA_WILDCARDOBSERVATIONSFILES_DESCR |
"Wildcard observations files" |
public static final java.lang.String |
DATA_WILDCARDXMLFILES |
"wildcardXMLFiles" |
public static final java.lang.String |
DATA_WILDCARDXMLFILES_DESCR |
"Wildcard XML files" |
public static final java.lang.String |
DATA_XML_NEWLINE |
"\n" |
public static final java.lang.String |
DATA_XMLINPUTFILES |
"dataXmlInputFiles" |
public static final java.lang.String |
DATA_XMLPARSER_DISP |
"XML parser:" |
public static final java.lang.String |
DATA_XMLPARSERCHOICE |
"org.apache.xerces.parsers.SAXParser" |
public static final java.lang.String |
DATA_XMLPREFIXSPACER |
"\t" |
public static final java.lang.String |
DATA_XMLREPORTFILE |
"xmlReportFile" |
public static final java.lang.String |
DATA_XMLSETTINGSTOEXPORT |
"xmlSettingsToExport" |
public static final int |
DATA_XMLTYPE_ELEMENT |
1 |
public static final java.lang.String |
DATA_XMLVERSION |
"1.0" |
public static final java.lang.String |
DATA_XMLVERSION_DISP |
"XML version:" |
public static final boolean |
DEBUG |
false |
public static final java.lang.String |
DEFAULT_ASKTOVERIFYSETTINGS |
"no" |
public static final java.lang.String |
DEFAULT_BESTNETWORKSARE |
"nonidentical" |
public static final java.lang.String |
DEFAULT_COMMENTINDICATOR |
"#" |
public static final java.lang.String |
DEFAULT_COMPUTECONSENSUSGRAPH |
"no" |
public static final java.lang.String |
DEFAULT_COMPUTEINFLUENCESCORES |
"no" |
public static final double |
DEFAULT_COOLINGFACTOR |
0.7d |
public static final java.lang.String |
DEFAULT_CREATEDOTOUTPUT |
"no" |
public static final java.lang.String |
DEFAULT_DATAREPORT |
"no" |
public static final java.lang.String |
DEFAULT_DISCRETIZATION |
"none" |
public static final int |
DEFAULT_DISCRETIZATIONPOINTS |
2 |
public static final java.lang.String |
DEFAULT_DISCRETIZATIONTYPE |
"none" |
public static final java.lang.String |
DEFAULT_DISPLAYCONSENSUSGRAPHASHTML |
"no" |
public static final java.lang.String |
DEFAULT_DISPLAYMEMORYINFO |
"no" |
public static final java.lang.String |
DEFAULT_DISPLAYSTATISTICS |
"no" |
public static final java.lang.String |
DEFAULT_DISPLAYSTRUCTURES |
"no" |
public static final java.lang.String |
DEFAULT_DOTFILEEXTENSION |
"txt" |
public static final java.lang.String |
DEFAULT_DOTGRAPHICSFORMAT |
"png" |
public static final int |
DEFAULT_EQUIVALENTSAMPLESIZE |
-1 |
public static final java.lang.String |
DEFAULT_ERRORFILE |
"error.txt" |
public static final java.lang.String |
DEFAULT_FILENAMEFORCONSENSUSGRAPH |
"graph.consensus" |
public static final java.lang.String |
DEFAULT_FILENAMEFORTOPGRAPH |
"graph.top" |
public static final java.lang.String |
DEFAULT_FILENAMEFORTOPGRAPHSASHTML |
"graphs.html" |
public static final int |
DEFAULT_FILEREPORTINGINTERVAL |
60 |
public static final java.lang.String |
DEFAULT_HTMLFILEEXTENSION |
"html" |
public static final long |
DEFAULT_INITIALTEMPERATURE |
1000l |
public static final java.lang.String |
DEFAULT_INPUTDIRECTORY |
"input" |
public static final java.lang.String |
DEFAULT_ITEMVALUESEPARATOR |
"=" |
public static final long |
DEFAULT_MAXACCEPTEDNETWORKSBEFORECOOLING |
2500l |
public static final int |
DEFAULT_MAXLEVELFORFASTCACHE |
2 |
public static final int |
DEFAULT_MAXPARENTCOUNT |
5 |
public static final long |
DEFAULT_MAXPROPOSEDNETWORKSBEFORECOOLING |
10000l |
public static final long |
DEFAULT_MAXPROPOSEDNETWORKSBEFORERESTART |
10000l |
public static final long |
DEFAULT_MINACCEPTEDNETWORKSBEFOREREANNEALING |
500l |
public static final long |
DEFAULT_MINPROPOSEDNETWORKSAFTERHIGHSCORE |
1000l |
public static final long |
DEFAULT_MINPROPOSEDNETWORKSBEFORERESTART |
5000l |
public static final long |
DEFAULT_MINPROPOSEDNETWORKSHIGHSCORE |
1000l |
public static final int |
DEFAULT_NBEST |
1 |
public static final java.lang.String |
DEFAULT_NODOTEXECUTABLESUPPPLIED |
"invalid setting value" |
public static final java.lang.String |
DEFAULT_OUTPUTDIRECTORY |
"output" |
public static final long |
DEFAULT_REANNEALINGTEMPERATURE |
800l |
public static final java.lang.String |
DEFAULT_REPORTFILE |
"results.txt" |
public static final java.lang.String |
DEFAULT_RESTARTWITHRANDOMNETWORK |
"yes" |
public static final int |
DEFAULT_SCREENREPORTINGINTERVAL |
10 |
public static final java.lang.String |
DEFAULT_SETTINGSFILENAME |
"banjo.txt" |
public static final java.lang.String |
DEFAULT_SUMMARYFILE |
"summary.txt" |
public static final java.lang.String |
DEFAULT_TIMESTAMP |
"yyyy.MM.dd.HH.mm.ss" |
public static final java.lang.String |
DEFAULT_TIMESTAMPSTRINGFORFILES |
"yyyy.MM.dd.HH.mm.ss" |
public static final java.lang.String |
DEFAULT_TOKENINDICATOR |
"@" |
public static final java.lang.String |
DEFAULT_TRACKINGFILE |
"trace.txt" |
public static final java.lang.String |
DEFAULT_USEBASICCACHE |
"yes" |
public static final java.lang.String |
DEFAULT_USECACHE |
"fastLevel2" |
public static final java.lang.String |
DEFAULT_VARIABLENAMES |
"none" |
public static final java.lang.String |
DEFAULT_VARIABLENAMESCHOICE |
"NONE" |
public static final java.lang.String |
DEFAULT_VARIABLESAREINROWS |
"no" |
public static final java.lang.String |
DEFAULT_WILDCARDINDICATOR |
"*" |
public static final java.lang.String |
DEFAULT_XMLOUTPUTDIRECTORY |
"output" |
public static final java.lang.String |
DEFAULT_XMLREPORTFILE |
"results.xml" |
public static final java.lang.String |
DELIMITER_DEFAULT_DISCRETIZATIONEXCEPTIONITEM |
":" |
public static final java.lang.String |
DELIMITER_DEFAULT_DISCRETIZATIONEXCEPTIONS |
"," |
public static final java.lang.String |
DELIMITER_DEFAULT_ITEM |
":" |
public static final java.lang.String |
DELIMITER_DEFAULT_LIST |
"," |
public static final java.lang.String |
DELIMITER_DEFAULT_LIST_XML |
"," |
public static final java.lang.String |
DELIMITER_DEFAULT_OBSERVATIONS |
"\t" |
public static final java.lang.String |
DELIMITER_DEFAULT_TIME |
":" |
public static final java.lang.String |
DELIMITER_SPACE |
" " |
public static final java.lang.String |
DELIMITER_SPECIAL |
"@,@" |
public static final java.lang.String |
DELIMITERCOLONWITHWHITESPACE |
"\\s?[:]\\s?" |
public static final java.lang.String |
DELIMITERCOMMAWITHWHITESPACE |
"\\s?[,]\\s?" |
public static final java.lang.String |
DELIMITERSPLUSWHITESPACE |
"\\s?[,:;]\\s?" |
public static final java.lang.String |
DELIMITERSPLUSWHITESPACE2 |
"\\s+[,:;]\\s+" |
public static final java.lang.String |
DELIMITERSWITHOUTWHITESPACE |
"[,:;]" |
public static final int |
ERROR_BANJO_DEV |
0 |
public static final int |
ERROR_BANJO_OUTOFMEMORY |
1000 |
public static final int |
ERROR_BANJO_UNEXPECTED |
200 |
public static final int |
ERROR_BANJO_USERINPUT |
100 |
public static final int |
ERROR_BANJO_XML |
110 |
public static final int |
ERROR_CHECKPOINTTRIGGER |
500 |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_CORRECTEDCHOICE |
"Alert: invalid setting choice was corrected." |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_DEFAULTAPPLIED |
"Alert: default applied." |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_DEPRECATEDSETTING |
"Alert: deprecated setting." |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_DEV |
"Alert: (dev)" |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_MISSINGDOTLOCATION |
"Alert: the path to dot is not specified" |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_MISSINGDOTLOCATION_INFO |
"To automatically create dot output, the path where dot is located on your system needs to be specified in the setting \'fullPathToDotExecutable\'." |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_OTHER |
"Alert: (general)" |
public static final java.lang.String |
ERRORDESCRIPTION_ALERT_UNKNOWNSETTING |
"Alert: unknown setting." |
public static final java.lang.String |
ERRORDESCRIPTION_DOTEXECUTION |
"\'dot\' execution" |
public static final java.lang.String |
ERRORDESCRIPTION_DOTINTERRUPTION |
"Interruption of \'dot\'" |
public static final java.lang.String |
ERRORDESCRIPTION_INVALIDCHOICE |
"Invalid setting choice" |
public static final java.lang.String |
ERRORDESCRIPTION_INVALIDPATH |
"Invalid file or directory path" |
public static final java.lang.String |
ERRORDESCRIPTION_INVALIDRANGE |
"Value out of accepted range" |
public static final java.lang.String |
ERRORDESCRIPTION_MISMATCHEDDATATYPE |
"Data is of unexpected type" |
public static final java.lang.String |
ERRORDESCRIPTION_MISSINGMANDATORYVALUE |
"Missing mandatory value" |
public static final java.lang.String |
ERRORDESCRIPTION_MISSINGVALUE |
"Missing value of required setting" |
public static final java.lang.String |
ERRORDESCRIPTION_OTHER |
"Other error" |
public static final java.lang.String |
ERRORDESCRIPTION_POSTPROCESSING |
"Post-processing" |
public static final java.lang.String |
ERRORDESCRIPTION_RULEVIOLATION |
"Rule violation" |
public static final java.lang.String |
ERRORDESCRIPTION_WARNING_INVALIDCHOICE |
"Warning: Invalid setting choice" |
public static final java.lang.String |
ERRORDESCRIPTION_WARNING_OTHER |
"Warning (dev)" |
public static final java.lang.String |
ERRORMESSAGEDISPLAYPREFIX |
"\n- " |
public static final java.lang.String |
ERRORMSG_BANJO_OUTOFMEMORY_1 |
"[Unrecoverable runtime error: out of memory]" |
public static final java.lang.String |
ERRORMSG_BANJO_OUTOFMEMORY_2 |
"Banjo\'s memory requirements during the search execution exceeded its maximum alloted memory of " |
public static final java.lang.String |
ERRORMSG_BANJO_OUTOFMEMORY_3 |
"Although the search cannot be continued, Banjo will try to display as much information as possible about the obtained results.\nIn addition, Banjo will attempt to complete as many post-processing options as possible." |
public static final java.lang.String |
ERRORMSG_BANJO_OUTOFMEMORY_3a |
"Although the search cannot be continued, Banjo will try to display as much information as possible about the obtained results." |
public static final java.lang.String |
ERRORMSG_BANJO_OUTOFMEMORY_3b |
"In addition, Banjo will attempt to complete as many post-processing options as possible." |
public static final java.lang.String |
ERRORMSG_COULDNOTFINDVALIDCHANGE |
"Tried unsuccessfully to find a valid bayesNetChange." |
public static final java.lang.String |
ERRORMSG_INVALIDSEARCHER |
"No valid searcher was specified in the settings file." |
public static final java.lang.String |
ERRORMSG_MISSING_SETTINGSFILE |
"The main settings file could not be loaded." |
public static final java.lang.String |
ERRORMSG_MISSINGFILE |
"File cannot be found: " |
public static final java.lang.String |
ERRORMSG_MISSINGOBSERVATIONS |
"ObservationsAsMatrix file cannot be found." |
public static final java.lang.String |
ERRORMSG_MISSINGSTRUCTUREFILE |
"A user-specified structure file cannot be found." |
public static final java.lang.String |
ERRORMSG_NULL_SEARCHER |
"The application was unable to create a searcher object." |
public static final int |
ERRORTYPE_ALERT_CORRECTEDCHOICE |
201 |
public static final int |
ERRORTYPE_ALERT_DEFAULTAPPLIED |
205 |
public static final int |
ERRORTYPE_ALERT_DEPRECATEDSETTING |
203 |
public static final int |
ERRORTYPE_ALERT_DEV |
308 |
public static final int |
ERRORTYPE_ALERT_MISSINGDOTLOCATION |
202 |
public static final int |
ERRORTYPE_ALERT_OTHER |
200 |
public static final int |
ERRORTYPE_ALERT_UNKNOWNSETTING |
204 |
public static final int |
ERRORTYPE_DOTEXECUTION |
121 |
public static final int |
ERRORTYPE_DOTINTERRUPTION |
120 |
public static final int |
ERRORTYPE_INVALIDCHOICE |
106 |
public static final int |
ERRORTYPE_INVALIDPATH |
107 |
public static final int |
ERRORTYPE_INVALIDRANGE |
104 |
public static final int |
ERRORTYPE_MISMATCHEDDATATYPE |
103 |
public static final int |
ERRORTYPE_MISSINGMANDATORYVALUE |
102 |
public static final int |
ERRORTYPE_MISSINGVALUE |
101 |
public static final int |
ERRORTYPE_OTHER |
110 |
public static final int |
ERRORTYPE_POSTPROCESSING |
130 |
public static final int |
ERRORTYPE_RULEVIOLATION |
105 |
public static final int |
ERRORTYPE_WARNING_INVALIDCHOICE |
306 |
public static final int |
ERRORTYPE_WARNING_OTHER |
307 |
public static final java.lang.String |
FEEDBACK_COLON |
":" |
public static final java.lang.String |
FEEDBACK_DASH |
"-" |
public static final java.lang.String |
FEEDBACK_DASHEDLINE |
"--------------------------------------------------------------------------------------------------------" |
public static final double |
FEEDBACK_DEFAULT_CUTOFF_TO_DAYS |
0.99d |
public static final double |
FEEDBACK_DEFAULT_CUTOFF_TO_HOURS |
0.99d |
public static final double |
FEEDBACK_DEFAULT_CUTOFF_TO_MINUTES |
0.99d |
public static final double |
FEEDBACK_DEFAULT_CUTOFF_TO_SECONDS |
0.99d |
public static final java.lang.String |
FEEDBACK_DEFAULT_TIME_DAYS |
"d" |
public static final java.lang.String |
FEEDBACK_DEFAULT_TIME_HOURS |
"h" |
public static final java.lang.String |
FEEDBACK_DEFAULT_TIME_MILLISECS |
"ms" |
public static final java.lang.String |
FEEDBACK_DEFAULT_TIME_MINUTES |
"m" |
public static final java.lang.String |
FEEDBACK_DEFAULT_TIME_SECONDS |
"s" |
public static final java.lang.String |
FEEDBACK_DISPLAYFORMATFORINFLUENCESCORE |
"####.0000" |
public static final java.lang.String |
FEEDBACK_DISPLAYFORMATFORNETWORKSCORE |
"####.0000" |
public static final int |
FEEDBACK_LINELENGTH |
78 |
public static final java.lang.String |
FEEDBACK_NEWLINE |
"\n" |
public static final java.lang.String |
FEEDBACK_NEWLINEPLUSDASHEDLINE |
"\n--------------------------------------------------------------------------------------------------------" |
public static final int |
FEEDBACK_NUMBEROFDECIMALSINTIMEDISPLAY |
2 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_DEFAULT |
0 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_IN_D |
1 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_IN_H |
2 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_IN_M |
3 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_IN_MS |
5 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_IN_S |
4 |
public static final int |
FEEDBACK_OPTION_TIMEFORMAT_MIXED |
6 |
public static final int |
FEEDBACK_PERCENTPADDINGLENGTH |
5 |
public static final java.lang.String |
FEEDBACK_QUOTES |
"\"" |
public static final java.lang.String |
FEEDBACK_SEPARATOR_ITEMS |
":" |
public static final java.lang.String |
FEEDBACK_SEPARATOR_VERTICAL |
"|" |
public static final java.lang.String |
FEEDBACK_SPACE |
" " |
public static final java.lang.String |
FEEDBACK_SPACESFORTRIMMING |
" " |
public static final int |
FEEDBACK_TIMEPADDINGLENGTH |
8 |
public static final java.lang.String |
FEEDBACKSTRING_FINALCHECK |
"(Final Checkpoint, after search completion) A final check revealed the following issues that were encountered during Banjo\'s execution:" |
public static final java.lang.String |
FEEDBACKSTRING_NETWORKS |
"Networks" |
public static final java.lang.String |
FEEDBACKSTRING_POSTPROC |
"(Final Checkpoint, after post-processing) A final check revealed the following issues that were encountered during Banjo\'s execution:" |
public static final java.lang.String |
FEEDBACKSTRING_REANNEALS |
"Re-anneals" |
public static final java.lang.String |
FEEDBACKSTRING_RESTARTS |
"Restarts" |
public static final java.lang.String |
FEEDBACKSTRING_STATUS |
"Status: " |
public static final java.lang.String |
FEEDBACKSTRING_TIME |
"Time" |
public static final int |
FILE_RESULTS |
0 |
public static final int |
FILE_RESULTSXML |
3 |
public static final int |
FILE_SUMMARY |
1 |
public static final int |
FILE_TRACE |
2 |
public static final int |
HASHGENERATORFACTOR |
37 |
public static final int |
INITIALHASHSIZE |
1000000 |
public static final int |
LIMIT_DEFAULTMAXPARENTCOUNT |
10 |
public static final int |
LIMITFORGLOBALGREEDYSEARCHTRIES |
1 |
public static final int |
LIMITFORTRIES |
1000 |
public static final int |
LOGGING_MINIMAL |
2 |
public static final int |
LOGGING_REGULAR |
1 |
public static final int |
LOGGING_VERBOSE |
3 |
public static final int |
MAXOUTPUTFILES |
4 |
public static final int |
MISSINGENTRYVALUE |
7 |
public static final double |
NUMERICSCORETOLERANCE |
5.0E-16d |
public static final java.lang.String |
PATTERN_DISCRETIZATIONEXCEPTION_ITEM |
"\\s?[:]\\s?" |
public static final java.lang.String |
PATTERN_DISCRETIZATIONEXCEPTIONS |
"\\s?,\\s?" |
public static final java.lang.String |
PATTERN_DYNAMICBAYESNET |
"\\s?[:]\\s?" |
public static final java.lang.String |
PATTERN_DYNAMICBAYESNETITEM |
"\\s+" |
public static final java.lang.String |
PATTERN_INTEGERLIST |
"\\s?[,]\\s?" |
public static final java.lang.String |
PATTERN_OBSERVATIONSPARSING_WHITESPACE |
"\\s+" |
public static final java.lang.String |
PATTERN_STATICBAYESNET |
"\\s+" |
public static final java.lang.String |
PATTERN_STRINGLIST |
"\\s?[,]\\s?" |
public static final java.lang.String |
PATTERN_VARCOUNT |
"\\s+" |
public static final java.lang.String |
PATTERN_VARIABLENAMES_SPECIALSPECIFIER |
"COMMAS" |
public static final java.lang.String |
PATTERN_VARIABLENAMESCHECKFORCOLON |
"\\s?[:]\\s?" |
public static final java.lang.String |
PATTERN_VARIABLENAMESCHECKFORCOMMAS |
"\\s?[,]\\s?" |
public static final java.lang.String |
PATTERN_VARIABLENAMESPARSING_DELS |
"\\s?[,:;]\\s?" |
public static final java.lang.String |
PATTERN_VARIABLENAMESPARSING_WHITESPACE |
"\\s+" |
public static final java.lang.String |
PATTERN_VARIABLENAMESSPECIALDELIMITER |
"@,@" |
public static final java.lang.String |
RELEASE |
"Release" |
public static final java.lang.String |
RELEASE_ALLRIGHTS |
"All rights reserved" |
public static final java.lang.String |
RELEASE_COPYRIGHT |
"Copyright (c) 2005-08 by Alexander J. Hartemink" |
public static final java.lang.String |
RELEASE_LICENCED |
"Licensed from Duke University" |
public static final java.lang.String |
SETTING_ASKTOVERIFYSETTINGS |
"askToVerifySettings" |
public static final java.lang.String |
SETTING_ASKTOVERIFYSETTINGS_DESCR |
"Ask to verify settings" |
public static final java.lang.String |
SETTING_ASKTOVERIFYSETTINGS_DISP |
"Ask to verify settings:" |
public static final java.lang.String |
SETTING_BANJOSEED |
"seedForStartingSearch" |
public static final java.lang.String |
SETTING_BANJOSEED_DESCR |
"seed for starting search" |
public static final java.lang.String |
SETTING_BANJOSEED_DISP |
"Seed for starting search:" |
public static final java.lang.String |
SETTING_BESTNETWORKSARE |
"bestNetworksAre" |
public static final java.lang.String |
SETTING_BESTNETWORKSARE_DESCR |
"Best networks are" |
public static final java.lang.String |
SETTING_BESTNETWORKSARE_DISP |
"Best networks are:" |
public static final java.lang.String |
SETTING_CMDARG_SETTINGSDIRECTORY |
"settingsDirectory" |
public static final java.lang.String |
SETTING_CMDARG_SETTINGSDIRECTORY_DESCR |
"Settings directory" |
public static final java.lang.String |
SETTING_CMDARG_SETTINGSFILENAME |
"settingsFile" |
public static final java.lang.String |
SETTING_CMDARG_SETTINGSFILENAME_DESCR |
"Settings file" |
public static final java.lang.String |
SETTING_CMDARG_SETTINGSFILENAME_DISP |
"Settings file:" |
public static final java.lang.String |
SETTING_COMPUTECONSENSUSGRAPH |
"computeConsensusGraph" |
public static final java.lang.String |
SETTING_COMPUTECONSENSUSGRAPH_DESCR |
"Compute consensus graph" |
public static final java.lang.String |
SETTING_COMPUTECONSENSUSGRAPH_DISP |
"Compute consensus graph:" |
public static final java.lang.String |
SETTING_COMPUTEINFLUENCESCORES |
"computeInfluenceScores" |
public static final java.lang.String |
SETTING_COMPUTEINFLUENCESCORES_DESCR |
"Compute influence scores" |
public static final java.lang.String |
SETTING_COMPUTEINFLUENCESCORES_DISP |
"Compute influence scores:" |
public static final java.lang.String |
SETTING_COOLINGFACTOR |
"coolingFactor" |
public static final java.lang.String |
SETTING_COOLINGFACTOR_DESCR |
"Cooling factor" |
public static final java.lang.String |
SETTING_COOLINGFACTOR_DISP |
"Cooling factor:" |
public static final java.lang.String |
SETTING_CREATEDOTOUTPUT |
"createDotOutput" |
public static final java.lang.String |
SETTING_CREATEDOTOUTPUT_DESCR |
"Create \'dot\' output" |
public static final java.lang.String |
SETTING_CREATEDOTOUTPUT_DISP |
"Create \'dot\' output:" |
public static final java.lang.String |
SETTING_CYCLECHECKERCHOICE |
"cycleCheckingMethod" |
public static final java.lang.String |
SETTING_CYCLECHECKERCHOICE_DESCR |
"Cycle checker choice" |
public static final java.lang.String |
SETTING_CYCLECHECKERCHOICE_DISP |
"Cycle checker:" |
public static final java.lang.String |
SETTING_DATAREPORT_DESCR |
"Discretization (data) report" |
public static final java.lang.String |
SETTING_DATASET |
"dataset" |
public static final java.lang.String |
SETTING_DATASET_DESCR |
"Dataset" |
public static final java.lang.String |
SETTING_DATASET_DISP |
"Dataset:" |
public static final java.lang.String |
SETTING_DBNMANDATORYIDENTITYLAGS |
"dbnMandatoryIdentityLags" |
public static final java.lang.String |
SETTING_DBNMANDATORYIDENTITYLAGS_DESCR |
"Dbn mandatory identity lags" |
public static final java.lang.String |
SETTING_DBNMANDATORYIDENTITYLAGS_DISP |
"DBN mandatory identity lag(s):" |
public static final java.lang.String |
SETTING_DBNMANDATORYIDENTITYLAGS_NONE |
"none" |
public static final java.lang.String |
SETTING_DECIDERCHOICE |
"deciderChoice" |
public static final java.lang.String |
SETTING_DECIDERCHOICE_DESCR |
"Decider choice" |
public static final java.lang.String |
SETTING_DECIDERCHOICE_DISP |
"Decider:" |
public static final java.lang.String |
SETTING_DEFAULT_DEBUGINFO |
"none" |
public static final int |
SETTING_DEFAULT_THREADS |
1 |
public static final java.lang.String |
SETTING_DEFAULTMAXPARENTCOUNT |
"defaultMaxParentCount" |
public static final java.lang.String |
SETTING_DEFAULTMAXPARENTCOUNT_DESCR |
"Default max. parent count" |
public static final java.lang.String |
SETTING_DEFAULTMAXPARENTCOUNT_DISP |
"Default max. parent count:" |
public static final java.lang.String |
SETTING_DEPREC_NUMBEROFINTERMEDIATEPROGRESSREPORTS |
"numberOfIntermediateProgressReports" |
public static final java.lang.String |
SETTING_DEPREC_WRITETOFILEINTERVAL |
"writeToFileInterval" |
public static final java.lang.String |
SETTING_DISCRETIZATIONEXCEPTIONS |
"discretizationExceptions" |
public static final java.lang.String |
SETTING_DISCRETIZATIONEXCEPTIONS_DESCR |
"Exceptions to the discretization policy" |
public static final java.lang.String |
SETTING_DISCRETIZATIONEXCEPTIONS_DISP |
"Exceptions to the discretization policy:" |
public static final java.lang.String |
SETTING_DISCRETIZATIONEXCEPTIONS_NONE_DISP |
"none" |
public static final java.lang.String |
SETTING_DISCRETIZATIONPOLICY |
"discretizationPolicy" |
public static final java.lang.String |
SETTING_DISCRETIZATIONPOLICY_DESCR |
"Discretization policy" |
public static final java.lang.String |
SETTING_DISCRETIZATIONPOLICY_DISP |
"Discretization policy:" |
public static final java.lang.String |
SETTING_DISCRETIZATIONREPORT |
"createDiscretizationReport" |
public static final java.lang.String |
SETTING_DISPLAYCONSENSUSGRAPHASHTML |
"createConsensusGraphAsHTML" |
public static final java.lang.String |
SETTING_DISPLAYCONSENSUSGRAPHASHTML_DESCR |
"Create consensus graph as HTML" |
public static final java.lang.String |
SETTING_DISPLAYCONSENSUSGRAPHASHTML_DISP |
"Create consensus graph as HTML:" |
public static final java.lang.String |
SETTING_DISPLAYDEBUGINFO |
"displayDebugInfo" |
public static final java.lang.String |
SETTING_DISPLAYDEBUGINFO_DESCR |
"Display debug info" |
public static final java.lang.String |
SETTING_DISPLAYDEBUGINFO_DISP |
"Display debug info:" |
public static final java.lang.String |
SETTING_DISPLAYMEMORYINFO |
"displayMemoryInfo" |
public static final java.lang.String |
SETTING_DISPLAYMEMORYINFO_DESCR |
"Display memory info" |
public static final java.lang.String |
SETTING_DISPLAYMEMORYINFO_DISP |
"Display memory info:" |
public static final java.lang.String |
SETTING_DISPLAYSTATISTICS |
"displayStatistics" |
public static final java.lang.String |
SETTING_DISPLAYSTATISTICS_DESCR |
"Display statistics" |
public static final java.lang.String |
SETTING_DISPLAYSTATISTICS_DISP |
"Display statistics:" |
public static final java.lang.String |
SETTING_DISPLAYSTRUCTURES |
"displayStructures" |
public static final java.lang.String |
SETTING_DISPLAYSTRUCTURES_DESCR |
"Display structures" |
public static final java.lang.String |
SETTING_DISPLAYSTRUCTURES_DISP |
"Display structures:" |
public static final java.lang.String |
SETTING_DOTFILEEXTENSION |
"dotFileExtension" |
public static final java.lang.String |
SETTING_DOTFILEEXTENSION_DESCR |
"\'dot\' file extension" |
public static final java.lang.String |
SETTING_DOTFILEEXTENSION_DISP |
"\'Dot\' file extension:" |
public static final java.lang.String |
SETTING_DOTGRAPHICSFORMAT |
"dotGraphicsFormat" |
public static final java.lang.String |
SETTING_DOTGRAPHICSFORMAT_DESCR |
"\'dot\' graphics format" |
public static final java.lang.String |
SETTING_DOTGRAPHICSFORMAT_DISP |
"\'dot\' graphics format:" |
public static final java.lang.String |
SETTING_EQUIVALENTSAMPLESIZE |
"equivalentSampleSize" |
public static final java.lang.String |
SETTING_EQUIVALENTSAMPLESIZE_DESCR |
"Equivalent sample size" |
public static final java.lang.String |
SETTING_EQUIVALENTSAMPLESIZE_DISP |
"Equivalent sample size for Dirichlet parameter prior:" |
public static final java.lang.String |
SETTING_ERRORDIRECTORY |
"errorDirectory" |
public static final java.lang.String |
SETTING_ERRORDIRECTORY_DESCR |
"Error directory" |
public static final java.lang.String |
SETTING_ERRORFILE |
"errorFile" |
public static final java.lang.String |
SETTING_EVALUATORCHOICE |
"evaluatorChoice" |
public static final java.lang.String |
SETTING_EVALUATORCHOICE_DESCR |
"Evaluator choice" |
public static final java.lang.String |
SETTING_EVALUATORCHOICE_DISP |
"Evaluator:" |
public static final java.lang.String |
SETTING_FILENAMEFORCONSENSUSGRAPH |
"fileNameForConsensusGraph" |
public static final java.lang.String |
SETTING_FILENAMEFORCONSENSUSGRAPH_DESCR |
"File name for consensus graph" |
public static final java.lang.String |
SETTING_FILENAMEFORCONSENSUSGRAPH_DISP |
"File name for consensus graph:" |
public static final java.lang.String |
SETTING_FILENAMEFORTOPGRAPH |
"fileNameForTopGraph" |
public static final java.lang.String |
SETTING_FILENAMEFORTOPGRAPH_DESCR |
"File name for top graph" |
public static final java.lang.String |
SETTING_FILENAMEFORTOPGRAPH_DISP |
"File name for top graph:" |
public static final java.lang.String |
SETTING_FILENAMEFORTOPGRAPHSASHTML |
"fileNameForGraphsAsHtml" |
public static final java.lang.String |
SETTING_FILENAMEFORTOPGRAPHSASHTML_DESCR |
"File name for graphs as html" |
public static final java.lang.String |
SETTING_FILENAMEFORTOPGRAPHSASHTML_DISP |
"File name for graphs in html format:" |
public static final java.lang.String |
SETTING_FILENAMEPREFIXFORTHREADS |
"fileNamePrefixForThreads" |
public static final java.lang.String |
SETTING_FILENAMEPREFIXFORTHREADS_DEFAULT |
"thread=@threadid@_" |
public static final java.lang.String |
SETTING_FILENAMEPREFIXFORTHREADS_DESCR |
"file name prefix for identifying threads" |
public static final java.lang.String |
SETTING_FILENAMEPREFIXFORTHREADS_DISP |
"File name prefix for identifying threads:" |
public static final java.lang.String |
SETTING_FILEREPORTINGINTERVAL |
"fileReportingInterval" |
public static final java.lang.String |
SETTING_FILEREPORTINGINTERVAL_DESCR |
"File reporting interval" |
public static final java.lang.String |
SETTING_FILEREPORTINGINTERVAL_DISP |
"File reporting interval:" |
public static final java.lang.String |
SETTING_FULLPATHTODOTEXECUTABLE |
"fullPathToDotExecutable" |
public static final java.lang.String |
SETTING_FULLPATHTODOTEXECUTABLE_DESCR |
"Full path to \'dot\' executable" |
public static final java.lang.String |
SETTING_FULLPATHTODOTEXECUTABLE_DISP |
"Location of \'dot\':" |
public static final java.lang.String |
SETTING_HTMLFILEEXTENSION |
"htmlFileExtension" |
public static final java.lang.String |
SETTING_HTMLFILEEXTENSION_DESCR |
"HTML file extension" |
public static final java.lang.String |
SETTING_HTMLFILEEXTENSION_DISP |
"HTML file extension:" |
public static final java.lang.String |
SETTING_INITIALSTRUCTUREFILE |
"initialStructureFile" |
public static final java.lang.String |
SETTING_INITIALSTRUCTUREFILE_DESCR |
"Initial structure file" |
public static final java.lang.String |
SETTING_INITIALSTRUCTUREFILE_DISP |
"Initial structure file:" |
public static final java.lang.String |
SETTING_INITIALTEMPERATURE |
"initialTemperature" |
public static final java.lang.String |
SETTING_INITIALTEMPERATURE_DESCR |
"Initial temperature" |
public static final java.lang.String |
SETTING_INITIALTEMPERATURE_DISP |
"Initial temperature:" |
public static final java.lang.String |
SETTING_INPUTDIRECTORY |
"inputDirectory" |
public static final java.lang.String |
SETTING_INPUTDIRECTORY_DESCR |
"Input directory" |
public static final java.lang.String |
SETTING_INPUTDIRECTORY_DISP |
"Input directory:" |
public static final java.lang.String |
SETTING_MAXACCEPTEDNETWORKSBEFORECOOLING |
"maxAcceptedNetworksBeforeCooling" |
public static final java.lang.String |
SETTING_MAXACCEPTEDNETWORKSBEFORECOOLING_DESCR |
"Max. accepted networks before cooling" |
public static final java.lang.String |
SETTING_MAXACCEPTEDNETWORKSBEFORECOOLING_DISP |
"Max. accepted networks before cooling:" |
public static final java.lang.String |
SETTING_MAXMARKOVLAG |
"maxMarkovLag" |
public static final java.lang.String |
SETTING_MAXMARKOVLAG_DESCR |
"Max. Markov lag" |
public static final java.lang.String |
SETTING_MAXMARKOVLAG_DISP |
"Max. Markov lag:" |
public static final java.lang.String |
SETTING_MAXPARENTCOUNT |
"maxParentCount" |
public static final java.lang.String |
SETTING_MAXPARENTCOUNT_DESCR |
"Max. parent count" |
public static final java.lang.String |
SETTING_MAXPARENTCOUNT_DISP |
"Max. parent count:" |
public static final java.lang.String |
SETTING_MAXPARENTCOUNTFORRESTART |
"maxParentCountForRestart" |
public static final java.lang.String |
SETTING_MAXPARENTCOUNTFORRESTART_DESCR |
"Max. parent count for restarts" |
public static final java.lang.String |
SETTING_MAXPARENTCOUNTFORRESTART_DISP |
" with max. parent count:" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKS |
"maxProposedNetworks" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKS_DESCR |
"Max. proposed networks" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKS_DISP |
"Max. proposed networks:" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKSBEFORECOOLING |
"maxProposedNetworksBeforeCooling" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKSBEFORECOOLING_DESCR |
"Max. proposed networks before cooling" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKSBEFORECOOLING_DISP |
"Max. proposed networks before cooling:" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKSBEFORERESTART |
"maxProposedNetworksBeforeRestart" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKSBEFORERESTART_DESCR |
"Max. proposed networks before restart" |
public static final java.lang.String |
SETTING_MAXPROPOSEDNETWORKSBEFORERESTART_DISP |
"Max. proposed networks before restart:" |
public static final java.lang.String |
SETTING_MAXRESTARTS |
"maxRestarts" |
public static final java.lang.String |
SETTING_MAXRESTARTS_DESCR |
"Max. restarts" |
public static final java.lang.String |
SETTING_MAXRESTARTS_DISP |
"Max. restarts:" |
public static final java.lang.String |
SETTING_MAXSEARCHTIME |
"maxTime" |
public static final java.lang.String |
SETTING_MAXSEARCHTIME_DESCR |
"Max. time" |
public static final java.lang.String |
SETTING_MAXSEARCHTIME_DISP |
"Max. time:" |
public static final java.lang.String |
SETTING_MAXTHREADS |
"threadCount" |
public static final java.lang.String |
SETTING_MINACCEPTEDNETWORKSBEFOREREANNEALING |
"minAcceptedNetworksBeforeReannealing" |
public static final java.lang.String |
SETTING_MINACCEPTEDNETWORKSBEFOREREANNEALING_DESCR |
"Min. accepted networks before reannealing" |
public static final java.lang.String |
SETTING_MINACCEPTEDNETWORKSBEFOREREANNEALING_DISP |
"Min. accepted networks before reannealing:" |
public static final java.lang.String |
SETTING_MINMARKOVLAG |
"minMarkovLag" |
public static final java.lang.String |
SETTING_MINMARKOVLAG_DESCR |
"Min. Markov lag" |
public static final java.lang.String |
SETTING_MINMARKOVLAG_DISP |
"Min. Markov lag:" |
public static final java.lang.String |
SETTING_MINNETWORKSBEFORECHECKING |
"minNetworksBeforeChecking" |
public static final java.lang.String |
SETTING_MINNETWORKSBEFORECHECKING_DESCR |
"Min. networks before checking" |
public static final java.lang.String |
SETTING_MINNETWORKSBEFORECHECKING_DISP |
"Min. networks before checking:" |
public static final java.lang.String |
SETTING_MINPROPOSEDNETWORKSAFTERHIGHSCORE |
"minProposedNetworksAfterHighScore" |
public static final java.lang.String |
SETTING_MINPROPOSEDNETWORKSAFTERHIGHSCORE_DESCR |
"Min. proposed networks after high score" |
public static final java.lang.String |
SETTING_MINPROPOSEDNETWORKSAFTERHIGHSCORE_DISP |
"Min. proposed networks after high score:" |
public static final java.lang.String |
SETTING_MINPROPOSEDNETWORKSBEFORERESTART |
"minProposedNetworksBeforeRestart" |
public static final java.lang.String |
SETTING_MINPROPOSEDNETWORKSBEFORERESTART_DESCR |
"Min. proposed networks before restart" |
public static final java.lang.String |
SETTING_MINPROPOSEDNETWORKSBEFORERESTART_DISP |
"Min. proposed networks before restart:" |
public static final java.lang.String |
SETTING_MUSTBEPRESENTEDGESFILE |
"mustBePresentEdgesFile" |
public static final java.lang.String |
SETTING_MUSTBEPRESENTEDGESFILE_DESCR |
"\'Must be present edges\' file" |
public static final java.lang.String |
SETTING_MUSTBEPRESENTEDGESFILE_DISP |
"\'Must be present\' edges file:" |
public static final java.lang.String |
SETTING_MUSTNOTBEPRESENTEDGESFILE |
"mustNotBePresentEdgesFile" |
public static final java.lang.String |
SETTING_MUSTNOTBEPRESENTEDGESFILE_DESCR |
"\'Must not be present edges\' file" |
public static final java.lang.String |
SETTING_MUSTNOTBEPRESENTEDGESFILE_DISP |
"\'Must not be present\' edges file:" |
public static final java.lang.String |
SETTING_NBEST |
"nBestNetworks" |
public static final java.lang.String |
SETTING_NBEST_DESCR |
"N-best networks" |
public static final java.lang.String |
SETTING_NBEST_DISP |
"Number of best networks tracked:" |
public static final java.lang.String |
SETTING_NOTES |
"notes" |
public static final java.lang.String |
SETTING_NOTES_DESCR |
"Notes" |
public static final java.lang.String |
SETTING_NOTES_DISP |
"Notes:" |
public static final java.lang.String |
SETTING_OBSERVATIONCOUNT |
"observationCount" |
public static final java.lang.String |
SETTING_OBSERVATIONCOUNT_DESCR |
"Observation count" |
public static final java.lang.String |
SETTING_OBSERVATIONCOUNT_DISP |
"Observation count:" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILE |
"observationsFile" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILE_DESCR |
"Observations file" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILE_DISP |
"Observations file:" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILE_WILDCARD_DISP |
"Observations files (wildcard spec.):" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILES_DISP |
"Observations files:" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILES_OMIT_DISP |
" Files omitted:" |
public static final java.lang.String |
SETTING_OBSERVATIONSFILES_USED_DISP |
" Files used:" |
public static final java.lang.String |
SETTING_OUTPUTDIRECTORY |
"outputDirectory" |
public static final java.lang.String |
SETTING_OUTPUTDIRECTORY_DESCR |
"Output directory" |
public static final java.lang.String |
SETTING_OUTPUTDIRECTORY_DISP |
"Output directory:" |
public static final java.lang.String |
SETTING_PRECOMPUTE |
"precomputeLogGamma" |
public static final java.lang.String |
SETTING_PRECOMPUTE_DESCR |
"Pre-compute logGamma" |
public static final java.lang.String |
SETTING_PRECOMPUTE_DISP |
"Pre-compute logGamma:" |
public static final java.lang.String |
SETTING_PROJECT |
"project" |
public static final java.lang.String |
SETTING_PROJECT_DESCR |
"Project" |
public static final java.lang.String |
SETTING_PROJECT_DISP |
"Project:" |
public static final java.lang.String |
SETTING_PROPOSERCHOICE |
"proposerChoice" |
public static final java.lang.String |
SETTING_PROPOSERCHOICE_DESCR |
"Proposer choice" |
public static final java.lang.String |
SETTING_PROPOSERCHOICE_DISP |
"Proposer:" |
public static final java.lang.String |
SETTING_REANNEALINGTEMPERATURE |
"reannealingTemperature" |
public static final java.lang.String |
SETTING_REANNEALINGTEMPERATURE_DESCR |
"Reannealing temperature" |
public static final java.lang.String |
SETTING_REANNEALINGTEMPERATURE_DISP |
"Reannealing temperature:" |
public static final java.lang.String |
SETTING_REPORTFILE |
"reportFile" |
public static final java.lang.String |
SETTING_REPORTFILE_DESCR |
"Report file" |
public static final java.lang.String |
SETTING_REPORTFILE_DISP |
"Report file:" |
public static final java.lang.String |
SETTING_RESTARTWITHRANDOMNETWORK |
"restartWithRandomNetwork" |
public static final java.lang.String |
SETTING_RESTARTWITHRANDOMNETWORK_DESCR |
"Restart with random network" |
public static final java.lang.String |
SETTING_RESTARTWITHRANDOMNETWORK_DISP |
"Restart method:" |
public static final java.lang.String |
SETTING_SCREENREPORTINGINTERVAL |
"screenReportingInterval" |
public static final java.lang.String |
SETTING_SCREENREPORTINGINTERVAL_DESCR |
"Screen reporting interval" |
public static final java.lang.String |
SETTING_SCREENREPORTINGINTERVAL_DISP |
"Screen reporting interval:" |
public static final java.lang.String |
SETTING_SEARCHERCHOICE |
"searcherChoice" |
public static final java.lang.String |
SETTING_SEARCHERCHOICE_DESCR |
"Searcher choice" |
public static final java.lang.String |
SETTING_SEARCHERCHOICE_DISP |
"Searcher:" |
public static final java.lang.String |
SETTING_STATISTICDEFAULT |
"Standard" |
public static final java.lang.String |
SETTING_STATISTICSCHOICE |
"statisticsChoice" |
public static final java.lang.String |
SETTING_STATISTICSCHOICE_DESCR |
"Statistics choice" |
public static final java.lang.String |
SETTING_STATISTICSCHOICE_DISP |
"Statistics:" |
public static final java.lang.String |
SETTING_SUMMARYFILE |
"summaryFile" |
public static final java.lang.String |
SETTING_SUMMARYFILE_DESCR |
"Summary file" |
public static final java.lang.String |
SETTING_THREADS |
"threads" |
public static final java.lang.String |
SETTING_THREADS_DESCR |
"Number of threads" |
public static final java.lang.String |
SETTING_THREADS_DISP |
"Number of threads:" |
public static final java.lang.String |
SETTING_TIMESTAMPSTRINGFORFILES |
"timeStampFormat" |
public static final java.lang.String |
SETTING_TIMESTAMPSTRINGFORFILES_DESCR |
"Time stamp format" |
public static final java.lang.String |
SETTING_TIMESTAMPSTRINGFORFILES_DISP |
"Time stamp format:" |
public static final java.lang.String |
SETTING_TRACKINGFILE |
"trackingFile" |
public static final java.lang.String |
SETTING_TRACKINGFILE_DESCR |
"Tracking file" |
public static final java.lang.String |
SETTING_USECACHE |
"useCache" |
public static final java.lang.String |
SETTING_USECACHE_DESCR |
"Use cache" |
public static final java.lang.String |
SETTING_USECACHE_DISP |
"Cache:" |
public static final java.lang.String |
SETTING_USER |
"user" |
public static final java.lang.String |
SETTING_USER_DESCR |
"User" |
public static final java.lang.String |
SETTING_USER_DISP |
"User:" |
public static final java.lang.String |
SETTING_VARCOUNT |
"variableCount" |
public static final java.lang.String |
SETTING_VARCOUNT_DESCR |
"Variable count" |
public static final java.lang.String |
SETTING_VARCOUNT_DISP |
"Number of variables:" |
public static final java.lang.String |
SETTING_VARIABLENAMES |
"variableNames" |
public static final java.lang.String |
SETTING_VARIABLENAMES_DESCR |
"Variable names" |
public static final java.lang.String |
SETTING_VARIABLENAMES_DISP |
"Variable names:" |
public static final java.lang.String |
SETTING_VARIABLESAREINROWS |
"variablesAreInRows" |
public static final java.lang.String |
SETTING_VARIABLESAREINROWS_DESCR |
"Variables are in rows" |
public static final java.lang.String |
SETTING_VARIABLESAREINROWS_DISP |
"Variables are in rows:" |
public static final java.lang.String |
SETTING_XMLINPUTDIRECTORY |
"xmlInputDirectory" |
public static final java.lang.String |
SETTING_XMLINPUTDIRECTORY_DESCR |
"XML input directory" |
public static final java.lang.String |
SETTING_XMLINPUTDIRECTORY_DISP |
"XML input directory:" |
public static final java.lang.String |
SETTING_XMLINPUTFILES |
"xmlInputFiles" |
public static final java.lang.String |
SETTING_XMLINPUTFILES_DESCR |
"XML input files" |
public static final java.lang.String |
SETTING_XMLINPUTFILES_DISP |
"XML input files:" |
public static final java.lang.String |
SETTING_XMLOUTPUTDIRECTORY |
"xmlOutputDirectory" |
public static final java.lang.String |
SETTING_XMLOUTPUTDIRECTORY_DESCR |
"XML output directory" |
public static final java.lang.String |
SETTING_XMLOUTPUTDIRECTORY_DISP |
"XML output directory:" |
public static final java.lang.String |
SETTING_XMLREPORTFILE |
"xmlReportFile" |
public static final java.lang.String |
SETTING_XMLREPORTFILE_DESCR |
"XML Report file" |
public static final java.lang.String |
SETTING_XMLREPORTFILE_DISP |
"XML Report file:" |
public static final java.lang.String |
SETTING_XMLSETTINGSTOEXPORT |
"xmlSettingsToExport" |
public static final java.lang.String |
SETTING_XMLSETTINGSTOEXPORT_DESCR |
"XML settings to export" |
public static final java.lang.String |
SETTING_XMLSETTINGSTOEXPORT_DISP |
"XML settings to export:" |
public static final double |
TEST_SCORETOLERANCE |
5.0E-7d |
public static final boolean |
TRACE_BAYESNET |
false |
public static final boolean |
TRACE_BAYESNETMANAGER |
false |
public static final boolean |
TRACE_BAYESNETSTRUCTURE |
false |
public static final boolean |
TRACE_BDEPRECOMPUTE |
false |
public static final boolean |
TRACE_CMDLINE |
false |
public static final boolean |
TRACE_COMBINENBEST |
false |
public static final boolean |
TRACE_CONSENSUSGRAPH |
false |
public static final boolean |
TRACE_DFSNEW |
false |
public static final boolean |
TRACE_DFSNEW_RESET |
false |
public static final boolean |
TRACE_DISCRETIZATION |
false |
public static final boolean |
TRACE_DYNAMICPARAMS |
false |
public static final boolean |
TRACE_EQUIVALENCECHECKER |
false |
public static final boolean |
TRACE_EQUIVALENCEPRUNING |
false |
public static final boolean |
TRACE_EQUIVALENCEPRUNING_DISPLAYNETWORKS |
false |
public static final boolean |
TRACE_EVAL |
false |
public static final boolean |
TRACE_EVALPARENTCOUNT |
false |
public static final boolean |
TRACE_FILEUTIL |
false |
public static final boolean |
TRACE_MEMORYUSE |
false |
public static final boolean |
TRACE_NODESCORES |
false |
public static final boolean |
TRACE_POSTPROCESSOR_FILEOUTPUT |
false |
public static final boolean |
TRACE_PROPOSER |
false |
public static final boolean |
TRACE_RESTART |
false |
public static final boolean |
TRACE_STATISTICS |
false |
public static final boolean |
TRACE_TRANSPOSEDDATA |
false |
public static final boolean |
TRACE_VALIDATEDPARAMS |
false |
public static final boolean |
TRACE_XMLOUTPUT |
false |
public static final java.lang.String |
UI_ASKTOVERIFYSETTINGS_NO |
"no" |
public static final java.lang.String |
UI_ASKTOVERIFYSETTINGS_YES |
"yes" |
public static final java.lang.String |
UI_BESTNETWORKSARE_NONEQUIVALENT |
"nonequivalent" |
public static final java.lang.String |
UI_BESTNETWORKSARE_NONEQUIVALENT_DISP |
" non-equivalent" |
public static final java.lang.String |
UI_BESTNETWORKSARE_NONIDENTICAL |
"nonidentical" |
public static final java.lang.String |
UI_BESTNETWORKSARE_NONIDENTICAL_DISP |
" non-identical" |
public static final java.lang.String |
UI_BESTNETWORKSARE_NONIDENTICALTHENPRUNED |
"nonidenticalThenPruned" |
public static final java.lang.String |
UI_BESTNETWORKSARE_NONIDENTICALTHENPRUNED_DISP |
" non-identical then pruned" |
public static final java.lang.String |
UI_COMPACTOBSERVATIONS |
"compactObservations" |
public static final java.lang.String |
UI_COMPUTECONSENSUSGRAPH_NO |
"no" |
public static final java.lang.String |
UI_COMPUTECONSENSUSGRAPH_YES |
"yes" |
public static final java.lang.String |
UI_COMPUTEINFLUENCESCORES_NO |
"no" |
public static final java.lang.String |
UI_COMPUTEINFLUENCESCORES_YES |
"yes" |
public static final java.lang.String |
UI_CREATEDOTOUTPUT_NO |
"no" |
public static final java.lang.String |
UI_CREATEDOTOUTPUT_YES |
"yes" |
public static final java.lang.String |
UI_CYCLECHECKER_BFS |
"BFS" |
public static final java.lang.String |
UI_CYCLECHECKER_DFS |
"DFS" |
public static final java.lang.String |
UI_CYCLECHECKER_DFSORIG |
"DFSorig" |
public static final java.lang.String |
UI_CYCLECHECKER_DFSWITHSHMUELI |
"DFSwithShmueli" |
public static final java.lang.String |
UI_DATAREPORT_NO |
"no" |
public static final java.lang.String |
UI_DATAREPORT_STANDARD |
"standard" |
public static final java.lang.String |
UI_DATAREPORT_WITHMAPPEDANDORIGINALVALUES |
"withMappedAndOriginalValues" |
public static final java.lang.String |
UI_DATAREPORT_WITHMAPPEDVALUES |
"withMappedValues" |
public static final java.lang.String |
UI_DEBUGINFO_NONE |
"none" |
public static final java.lang.String |
UI_DEBUGINFO_STACKTRACE |
"stackTrace" |
public static final java.lang.String |
UI_DEC_GREEDY |
"Greedy" |
public static final java.lang.String |
UI_DEC_METROPOLIS |
"Metropolis" |
public static final java.lang.String |
UI_DEFAULT |
"default" |
public static final java.lang.String |
UI_DEFAULTEDTO_DISP |
" defaulted to " |
public static final java.lang.String |
UI_DISCRETIZATIONBYINTERVAL |
"i" |
public static final java.lang.String |
UI_DISCRETIZATIONBYQUANTILE |
"q" |
public static final java.lang.String |
UI_DISCRETIZATIONNONE |
"none" |
public static final java.lang.String |
UI_DISPLAYCONSENSUSGRAPHASHTML_NO |
"no" |
public static final java.lang.String |
UI_DISPLAYCONSENSUSGRAPHASHTML_YES |
"yes" |
public static final java.lang.String |
UI_DISPLAYMEMORYINFO_NO |
"no" |
public static final java.lang.String |
UI_DISPLAYMEMORYINFO_YES |
"yes" |
public static final java.lang.String |
UI_DISPLAYSTATISTICS_NO |
"no" |
public static final java.lang.String |
UI_DISPLAYSTATISTICS_YES |
"yes" |
public static final java.lang.String |
UI_DISPLAYSTRUCTURES_NO |
"no" |
public static final java.lang.String |
UI_DISPLAYSTRUCTURES_YES |
"yes" |
public static final java.lang.String |
UI_DOTFORMAT_CANON |
"canon" |
public static final java.lang.String |
UI_DOTFORMAT_CMAP |
"CMAP" |
public static final java.lang.String |
UI_DOTFORMAT_DOT |
"dot" |
public static final java.lang.String |
UI_DOTFORMAT_FIG |
"fig" |
public static final java.lang.String |
UI_DOTFORMAT_GD |
"gd" |
public static final java.lang.String |
UI_DOTFORMAT_GIF |
"gif" |
public static final java.lang.String |
UI_DOTFORMAT_HPGL |
"hpgl" |
public static final java.lang.String |
UI_DOTFORMAT_IMAP |
"IMAP" |
public static final java.lang.String |
UI_DOTFORMAT_JPG |
"jpg" |
public static final java.lang.String |
UI_DOTFORMAT_MIF |
"mif" |
public static final java.lang.String |
UI_DOTFORMAT_MP |
"mp" |
public static final java.lang.String |
UI_DOTFORMAT_PCL |
"pcl" |
public static final java.lang.String |
UI_DOTFORMAT_PIC |
"pic" |
public static final java.lang.String |
UI_DOTFORMAT_PLAIN |
"plain" |
public static final java.lang.String |
UI_DOTFORMAT_PNG |
"png" |
public static final java.lang.String |
UI_DOTFORMAT_PS |
"ps" |
public static final java.lang.String |
UI_DOTFORMAT_PS2 |
"ps2" |
public static final java.lang.String |
UI_DOTFORMAT_SVG |
"svg" |
public static final java.lang.String |
UI_DOTFORMAT_VBMP |
"vbmp" |
public static final java.lang.String |
UI_DOTFORMAT_VRML |
"vrml" |
public static final java.lang.String |
UI_DOTFORMAT_VTX |
"vtx" |
public static final java.lang.String |
UI_EVAL_BDE |
"BDe" |
public static final java.lang.String |
UI_FULLPATHTODOTEXECUTABLE_NOTSUPPLIED |
"not supplied" |
public static final java.lang.String |
UI_ORIGINALOBSERVATIONS |
"originalObservations" |
public static final java.lang.String |
UI_PARENTSETSASARRAYS |
"parentSetsAsArrays" |
public static final java.lang.String |
UI_PARENTSETSASMATRICES |
"parentSetsAsMatrices" |
public static final java.lang.String |
UI_PRECOMPUTE_DEFAULT |
"yes" |
public static final java.lang.String |
UI_PRECOMPUTE_NO |
"no" |
public static final java.lang.String |
UI_PRECOMPUTE_YES |
"yes" |
public static final java.lang.String |
UI_PROP_ALLLOCALMOVES |
"AllLocalMoves" |
public static final java.lang.String |
UI_PROP_RANDOMLOCALMOVE |
"RandomLocalMove" |
public static final java.lang.String |
UI_RECORDER_COMPACT |
"Compact" |
public static final java.lang.String |
UI_RECORDER_STANDARD |
"Standard" |
public static final java.lang.String |
UI_RECORDER_VERBOSE |
"Verbose" |
public static final java.lang.String |
UI_RESTARTWITHRANDOMNETWORK_NO |
"no" |
public static final java.lang.String |
UI_RESTARTWITHRANDOMNETWORK_YES |
"yes" |
public static final java.lang.String |
UI_SEARCHER_GREEDY |
"Greedy" |
public static final java.lang.String |
UI_SEARCHER_SIMANNEAL |
"SimAnneal" |
public static final java.lang.String |
UI_SEARCHER_SKIP |
"Skip" |
public static final java.lang.String |
UI_USEBASICCACHE_NO |
"no" |
public static final java.lang.String |
UI_USEBASICCACHE_YES |
"yes" |
public static final java.lang.String |
UI_USECACHE_BASIC |
"basic" |
public static final java.lang.String |
UI_USECACHE_FASTLEVEL_0 |
"fastLevel0" |
public static final java.lang.String |
UI_USECACHE_FASTLEVEL_1 |
"fastLevel1" |
public static final java.lang.String |
UI_USECACHE_FASTLEVEL_2 |
"fastLevel2" |
public static final java.lang.String |
UI_USECACHE_NONE |
"none" |
public static final java.lang.String |
UI_VARIABLENAMES_INFILE |
"inFile" |
public static final java.lang.String |
UI_VARIABLENAMES_NONE |
"none" |
public static final java.lang.String |
UI_VARIABLENAMESCHOICE_COMMAS |
"COMMAS" |
public static final java.lang.String |
UI_VARIABLENAMESCHOICE_INFILE |
"INFILE" |
public static final java.lang.String |
UI_VARIABLENAMESCHOICE_NONE |
"NONE" |
public static final java.lang.String |
UI_VARIABLESAREINROWS_NO |
"no" |
public static final java.lang.String |
UI_VARIABLESAREINROWS_YES |
"yes" |
public static final java.lang.String |
UI_XMLSETTINGSTOEXPORT_ALL |
"all" |
public static final java.lang.String |
VALIDATION_DATATYPE_DIRECTORY |
"Directory" |
public static final java.lang.String |
VALIDATION_DATATYPE_DISCRETIZATIONEXCEPTIONS |
"discretizationExceptions" |
public static final java.lang.String |
VALIDATION_DATATYPE_DISCRETIZATIONPOLICY |
"discretizationPolicy" |
public static final java.lang.String |
VALIDATION_DATATYPE_DOUBLE |
"Double" |
public static final java.lang.String |
VALIDATION_DATATYPE_FILE |
"File" |
public static final java.lang.String |
VALIDATION_DATATYPE_FILEPATH |
"Path" |
public static final java.lang.String |
VALIDATION_DATATYPE_INTEGER |
"Integer" |
public static final java.lang.String |
VALIDATION_DATATYPE_INTEGERLIST |
"IntegerList" |
public static final java.lang.String |
VALIDATION_DATATYPE_LONG |
"Long" |
public static final java.lang.String |
VALIDATION_DATATYPE_STRING |
"String" |
public static final java.lang.String |
VALIDATION_DATATYPE_TIME |
"Time" |
public static final java.lang.String |
VALIDATION_DATATYPE_TIMESTAMP |
"Timestamp" |
public static final int |
VALIDATIONTYPE_BASICRANGE |
3 |
public static final int |
VALIDATIONTYPE_MANDATORY |
1 |
public static final int |
VALIDATIONTYPE_OPTIONAL |
2 |
public static final int |
VALIDATIONTYPE_RULE |
4 |
public static final java.lang.String |
WHITESPACE_MULTIPLECHARACTERS |
"\\s+" |
public static final java.lang.String |
WHITESPACE_SINGLECHARACTER |
"\\s" |
edu.duke.cs.banjo.utility.BanjoException | ||
private static final long |
serialVersionUID |
7526472295622776147l |
edu.duke.cs.banjo.utility.InfluenceScorer | ||
protected final double |
scoreDiff |
5.0E-7d |
protected final double |
unreachableBDeScore |
1.0d |
edu.duke.cs.banjo.utility.JZOOWildCardFilter | ||
final java.lang.String |
ANYTHING |
"anything" |
final java.lang.String |
EXPECT |
"expect" |
final java.lang.String |
FIND |
"find" |
final java.lang.String |
NOTHING |
"nothing" |
edu.duke.cs.banjo.utility.StringUtil | ||
private static final int |
MILLISECSPERDAY |
86400000 |
private static final int |
MILLISECSPERHOUR |
3600000 |
private static final int |
MILLISECSPERMINUTE |
60000 |
private static final int |
MILLISECSPERSECOND |
1000 |
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