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ANYTHING
- Variable in class edu.duke.cs.banjo.utility.
JZOOWildCardFilter
APPLICATIONSTATUS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATIONSTATUS_LOADINGDATA
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATIONSTATUS_LOADINGOBSERVATIONS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATIONSTATUS_LOADINGSTRUCTUREFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATIONSTATUS_SEARCHING
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATIONSTATUS_STARTUP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATIONSTATUS_STARTUPCOMPLETED
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATION_NAME
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATION_NAME_LONG
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATION_VERSIONDATE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATION_VERSIONDESCRIPTION
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
APPLICATION_VERSIONNUMBER
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
accept(File, String)
- Method in class edu.duke.cs.banjo.utility.
JZOOWildCardFilter
acceptedPerTemperature
- Variable in class edu.duke.cs.banjo.learner.
SearcherSimAnneal
acyclicChangeTypeTracker
- Variable in class edu.duke.cs.banjo.learner.components.
CycleChecker
addParent(int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
addParent(int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
addParent(int, int, int)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
addToErrors(Set)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Adds a set of errors to the collectedErrors set.
addToErrors(BanjoError)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Add a single error to the collectedErrors set.
addToErrors(BanjoError, Exception)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Add a single error to the collectedErrors set.
addToGeneralProcessDataStorage(Object)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
addToProcessedSettings(SettingItem)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
addToWarnings(Set)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Adds a set of warnings to the collectedWarnings set.
addToWarnings(BanjoError)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Add a single warning to the collectedWarnings set.
addableParentMatrix
- Variable in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsArraySelector
addableParentMatrix
- Variable in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsMatrixSelector
addableParents
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetManager
additionalInfo
- Variable in class edu.duke.cs.banjo.utility.
BanjoErrorHandler
adjustForLocalChange(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics.CycleFinder
adjustForLocalChange(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics.CycleFinderDFS
adjustForLocalChange(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics.CycleFinderDFSorig
adjustForLocalChange(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics.CycleFinderDFSwithShmueli
adjustForLocalChange(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
adjustForLocalChange(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
adjustForLocalChange(int)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
adjustNodeScoresForUndo(BayesNetChangeI)
- Method in class edu.duke.cs.banjo.learner.components.
Evaluator
adjustNodeScoresForUndo(BayesNetChangeI)
- Method in class edu.duke.cs.banjo.learner.components.
EvaluatorBDe
adjustNodeScoresForUndo(BayesNetChangeI)
- Method in interface edu.duke.cs.banjo.learner.components.
EvaluatorI
Adjusts the various internal score containers when a bayesNetChange is not permanently kept.
alpha
- Variable in class edu.duke.cs.banjo.learner.components.
EvaluatorBDe
alpha
- Variable in class edu.duke.cs.banjo.utility.
InfluenceScorer
alpha_ij
- Variable in class edu.duke.cs.banjo.utility.
InfluenceScorer
alpha_ijk
- Variable in class edu.duke.cs.banjo.utility.
InfluenceScorer
ancestorSet
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
ancestorSet
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
applyChange(BayesNetChangeI)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetManager
applyChange(BayesNetChangeI)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetManagerI
arrFileList
- Variable in class edu.duke.cs.banjo.utility.
XMLProcessor
arrayAsString(int[])
- Static method in class edu.duke.cs.banjo.utility.
StringUtil
Utility method (debug/test): Trivial helper function for quick trace output.
arrayOfParentCounts
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
arrayOfParentCountsToCompareTo
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
askToVerifySettings()
- Method in class edu.duke.cs.banjo.learner.
Searcher
(Optional) Lets user verify the selected search parameters before running a search.
assignBayesNetStructure(EdgesI, double, long)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
assignBayesNetStructure(EdgesWithCachedStatisticsI, double, long)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
assignBayesNetStructure(EdgesI, double, long)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetStructureI
assignBayesNetStructure(EdgesWithCachedStatisticsI, double, long)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetStructureI
assignMatrix(int[])
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArray
assignMatrix(EdgesI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArray
assignMatrix(EdgesAsArray)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArray
assignMatrix(EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
assignMatrix(int[][][])
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrix
assignMatrix(EdgesI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrix
assignMatrix(EdgesAsMatrix)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrix
assignMatrix(EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
assignMatrix(EdgesI)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesI
assignMatrix(EdgesWithCachedStatisticsI)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
assignNodeScoreHashItem(int, int[][], double)
- Method in class edu.duke.cs.banjo.bayesnet.
NodeScoreCacheItem
Assigns a cached item using the underlying parameters that describe it.
assignNodeScoreHashItem(int, int[][], double)
- Method in interface edu.duke.cs.banjo.bayesnet.
NodeScoreCacheItemI
Assigns a cached item using the underlying parameters that describe it.
assignProperties(Properties)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Helper function to make a copy of a Properties object.
assignSet(Set)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Helper function to make a copy of a set of objects (of types SettingItem, String, or BanjoError)
associatedDirectory
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
associatedFileName
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
Overview
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