A B C D E F G H I J L M N O P R S T U V W X

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DATA_BANJOSEED - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLFORMATVERSION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLFORMATVERSION_1 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLFORMATVERSION_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_BANJODATA - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_BANJOSETTINGS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_BANJOXMLFORMATVERSION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_MAXMARKOVLAG - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_MINMARKOVLAG - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_NBESTNETWORKS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_NETWORK - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_NETWORKSCORE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_NETWORKSTRUCTURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_VARCOUNT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_BANJOXMLTAG_XMLVERSION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CONSENSUSGRAPHASHTML - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CURRENTTEMPERATURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKER_APPLYTHENCHECK - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKER_CHECKTHENAPPLY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_BFS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_BFS_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_BFS_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_CHECKFORCYCLES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_DFS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_DFSORIG - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_DFSORIG_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_DFSORIG_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_DFS_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_DFS_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_NOCHECKING - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_SHMUELI - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_SHMUELI_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_SHMUELI_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_CYCLECHECKING_TREATASPLAINNODES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_DEFAULTDISCRETIZATIONCHOICE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_DEFAULTDISCRETIZATIONPOINTS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_DEFAULT_FASTCACHELEVEL - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_DISCRETIZATIONEXCEPTION_POINTSLIST - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_DISCRETIZATIONEXCEPTION_TYPELIST - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_DISCRETIZATIONREPORT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_ELAPSEDTIME - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FASTCACHELEVEL0 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FASTCACHELEVEL1 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FASTCACHELEVEL2 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FILE_BESTNETWORK_GRAPHICS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FILE_BESTNETWORK_STRUCTURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FILE_CONSENSUSGRAPHASHTML - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FILE_CONSENSUSGRAPH_GRAPHICS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FILE_CONSENSUSGRAPH_STRUCTURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FILE_INFLUENCESCORES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_FINALREPORT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_GLOBALHIGHSCORE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_GLOBALHIGHSCORESTRUCTURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_INITIALSTRUCTURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_INITIALSTRUCTURE_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MAXMARKOVLAG_TOKEN - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MAXMARKOVLAG_TOKEN_ALT0 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MAXTHREADS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MEMORYINFO - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MEMORYINFOATFINISH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MEMORYINFOBEFORESTART - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MINMARKOVLAG_TOKEN - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MINMARKOVLAG_TOKEN_ALT0 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MUSTBEABSENTPARENTS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MUSTBEABSENTPARENTS_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MUSTBEPRESENTPARENTS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_MUSTBEPRESENTPARENTS_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_NBEST_NEWLINE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_NETWORKSVISITEDGLOBALCOUNTER - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_NOFASTCACHE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVATIONCOUNT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVATIONCOUNT_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVATIONCOUNT_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVATIONCOUNT_EFFECTIVE_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVATIONCOUNT_EFFECTIVE_DISP_DBN - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVEDOBSERVATIONCOUNT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVEDOBSERVATIONCOUNT_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVEDOBSERVATIONCOUNT_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVEDOBSERVATIONROWCOUNT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVEDOBSERVATIONROWCOUNT_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OBSERVEDOBSERVATIONROWCOUNT_DISP_PL - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OMITFILE_IDENTIFIER - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OMITTEDWILDCARDOBSERVATIONSFILES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OMITTEDWILDCARDOBSERVATIONSFILES_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OMITTEDWILDCARDXMLFILES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_OMITTEDWILDCARDXMLFILES_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_PROPOSEDNETWORKS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_REPORTFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_RESTARTWITHINITALNETWORK_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_RESTARTWITHRANDOMNETWORK_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHDATA - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHERINFO_COREOBJECTS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHERINFO_FEEDBACK_1 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHERINFO_FEEDBACK_2 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHERINFO_SPECIFICSEARCHER - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHERINFO_STATISTICS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHER_OMITTIMEDISPLAY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEARCHSTATISTICS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEPARATORBACKWARDSLASH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEPARATORCOLON - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SEPARATORFORWARDSLASH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGDEFAULTVALUE_EMPTY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGINVALIDVALUE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGNODEFAULTVALUE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGNOTFOUND - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGNOVALUEPROVIDED - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGSDIRECTORYFORDEFAULTVALUES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SETTINGSFILEFORDEFAULTVALUES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SPECIFIEDOBSERVATIONCOUNT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SPECIFIEDOBSERVATIONCOUNT_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SPECIFIEDOBSERVATIONCOUNT_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SPECIFIEDSETTINGSFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_SPECIFIEDSETTINGSFILEDIRECTORY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_THREADID_TOKEN - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_THREADID_TOKEN_ALT0 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_THREADINDEX - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_THREADINDEX_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_THREADNAME - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_THREAD_FILEIDENTIFIER - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TIMESTAMP_TOKEN - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TIMESTAMP_TOKEN_ALT0 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TIMESTAMP_TOKEN_ALT1 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TIMESTAMP_TOKEN_ALT2 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TIMESTAMP_TOKEN_ALT3 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TOTALTIMEFORPREP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TOTALTIMEFORSEARCH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYANNEALEREND - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYANNEALERSTART - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYBNMBEFOREINITIALSTRUCT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYBNMBEFORENODECACHE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYBNMEND - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYBNMSTART - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYLOADINGOBSERVATIONS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYLOADINGOBSERVATIONSCOMPLETED - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYLOADINGOBSERVATIONSINPROGRESS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYOBSERVATIONSTAGING - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYOBSERVATIONSTAGINGRELEASED - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYSEARCHEREND - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_TRACEMEMORYSEARCHERSTART - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_USEBASICCACHE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_USEFASTCACHELEVEL - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_VARCOUNT_TOKEN - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_VARCOUNT_TOKEN_ALT0 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_VARIABLENAMES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_VARIABLENAMESCHOICE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_WILDCARDOBSERVATIONSFILES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_WILDCARDOBSERVATIONSFILES_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_WILDCARDXMLFILES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_WILDCARDXMLFILES_DESCR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLINPUTFILES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLPARSERCHOICE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLPARSER_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLPREFIXSPACER - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLREPORTFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLSETTINGSTOEXPORT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLTYPE_ELEMENT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLVERSION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XMLVERSION_DISP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DATA_XML_NEWLINE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEBUG - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_ASKTOVERIFYSETTINGS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_BESTNETWORKSARE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_COMMENTINDICATOR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_COMPUTECONSENSUSGRAPH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_COMPUTEINFLUENCESCORES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_COOLINGFACTOR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_CREATEDOTOUTPUT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DATAREPORT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISCRETIZATION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISCRETIZATIONPOINTS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISCRETIZATIONTYPE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISPLAYCONSENSUSGRAPHASHTML - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISPLAYMEMORYINFO - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISPLAYSTATISTICS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DISPLAYSTRUCTURES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DOTFILEEXTENSION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_DOTGRAPHICSFORMAT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_EQUIVALENTSAMPLESIZE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_ERRORFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_FILENAMEFORCONSENSUSGRAPH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_FILENAMEFORTOPGRAPH - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_FILENAMEFORTOPGRAPHSASHTML - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_FILEREPORTINGINTERVAL - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_HTMLFILEEXTENSION - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_INITIALTEMPERATURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_INPUTDIRECTORY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_ITEMVALUESEPARATOR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MAXACCEPTEDNETWORKSBEFORECOOLING - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MAXLEVELFORFASTCACHE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MAXPARENTCOUNT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MAXPROPOSEDNETWORKSBEFORECOOLING - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MAXPROPOSEDNETWORKSBEFORERESTART - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MINACCEPTEDNETWORKSBEFOREREANNEALING - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MINPROPOSEDNETWORKSAFTERHIGHSCORE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MINPROPOSEDNETWORKSBEFORERESTART - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_MINPROPOSEDNETWORKSHIGHSCORE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_NBEST - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_NODOTEXECUTABLESUPPPLIED - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_OUTPUTDIRECTORY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_REANNEALINGTEMPERATURE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_REPORTFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_RESTARTWITHRANDOMNETWORK - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_SCREENREPORTINGINTERVAL - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_SETTINGSFILENAME - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_SUMMARYFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_TIMESTAMP - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_TIMESTAMPSTRINGFORFILES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_TOKENINDICATOR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_TRACKINGFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_USEBASICCACHE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_USECACHE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_VARIABLENAMES - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_VARIABLENAMESCHOICE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_VARIABLESAREINROWS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_WILDCARDINDICATOR - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_XMLOUTPUTDIRECTORY - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DEFAULT_XMLREPORTFILE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITERCOLONWITHWHITESPACE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITERCOMMAWITHWHITESPACE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITERSPLUSWHITESPACE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITERSPLUSWHITESPACE2 - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITERSWITHOUTWHITESPACE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_DISCRETIZATIONEXCEPTIONITEM - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_DISCRETIZATIONEXCEPTIONS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_ITEM - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_LIST - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_LIST_XML - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_OBSERVATIONS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_DEFAULT_TIME - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_SPACE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DELIMITER_SPECIAL - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
DFS(int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSwithShmueli
 
DFSorig(int, int, BayesNetChangeI) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSorig
 
DFSorigForCrossCheck(int, int, BayesNetChangeI) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
DFSplain(int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFS
 
DataPreparer - class edu.duke.cs.banjo.data.observations.DataPreparer.
Contains the code common to DataPreparer implementations.
DataPreparer(Settings, PreprocessedObservations) - Constructor for class edu.duke.cs.banjo.data.observations.DataPreparer
 
DataPreparerBasic - class edu.duke.cs.banjo.data.observations.DataPreparerBasic.
Implements a basic dataPreparer.
DataPreparerBasic(Settings, PreprocessedObservations) - Constructor for class edu.duke.cs.banjo.data.observations.DataPreparerBasic
 
DataPreparerI - interface edu.duke.cs.banjo.data.observations.DataPreparerI.
Documents the interface for the data preparer classes.
Decider - class edu.duke.cs.banjo.learner.components.Decider.
Combines common code shared by the different decider implementations.
Decider(BayesNetManagerI, Settings) - Constructor for class edu.duke.cs.banjo.learner.components.Decider
 
DeciderGreedy - class edu.duke.cs.banjo.learner.components.DeciderGreedy.
Decides whether to keep a proposed change, based on a greedy decision algorithm.
DeciderGreedy(BayesNetManagerI, Settings, double) - Constructor for class edu.duke.cs.banjo.learner.components.DeciderGreedy
 
DeciderI - interface edu.duke.cs.banjo.learner.components.DeciderI.
Documents the interface for creating a decider implementation.
DeciderMetropolis - class edu.duke.cs.banjo.learner.components.DeciderMetropolis.
Decides whether to keep a proposed change, based on a Metropolis-Hastings decision algorithm.
DeciderMetropolis(BayesNetManagerI, Settings, double) - Constructor for class edu.duke.cs.banjo.learner.components.DeciderMetropolis
 
Discretizer - class edu.duke.cs.banjo.data.observations.Discretizer.
Contains the code common to Discretizer implementations.
Discretizer(SortedMap, int) - Constructor for class edu.duke.cs.banjo.data.observations.Discretizer
 
DiscretizerI - interface edu.duke.cs.banjo.data.observations.DiscretizerI.
Documents the interface for the discretizer classes.
DiscretizerInterval - class edu.duke.cs.banjo.data.observations.DiscretizerInterval.
Implements a discretizer based on placing the data by intervals.
DiscretizerInterval(SortedMap, int) - Constructor for class edu.duke.cs.banjo.data.observations.DiscretizerInterval
 
DiscretizerQuantile - class edu.duke.cs.banjo.data.observations.DiscretizerQuantile.
Implements a discretizer based on placing the data by quantiles.
DiscretizerQuantile(SortedMap, int, int) - Constructor for class edu.duke.cs.banjo.data.observations.DiscretizerQuantile
 
DiscretizerTrivial - class edu.duke.cs.banjo.data.observations.DiscretizerTrivial.
Implements a "dummy" discretizer when we don't need to discretize the data.
DiscretizerTrivial(SortedMap, int, int) - Constructor for class edu.duke.cs.banjo.data.observations.DiscretizerTrivial
 
dataTypeToValidateAgainst - Variable in class edu.duke.cs.banjo.data.settings.SettingItem.DataTypeValidator
 
dbnMandatoryIdentityLags - Variable in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
decider - Variable in class edu.duke.cs.banjo.learner.Searcher
 
defaultProcessParameters - Variable in class edu.duke.cs.banjo.data.settings.Settings
 
deleteParent(int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
deleteParent(int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
deleteParent(int, int, int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
deleteableParents - Variable in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
dimLags - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
dimLags - Variable in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
dimLags - Variable in class edu.duke.cs.banjo.learner.components.EquivalenceCheckerBasic
 
dimLags - Variable in class edu.duke.cs.banjo.learner.components.EvaluatorBDe
 
dimLags - Variable in class edu.duke.cs.banjo.learner.components.ProposerRandomLocalMove.EdgesAsArraySelector
 
dimObservations - Variable in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
dimObservations - Variable in class edu.duke.cs.banjo.learner.components.EvaluatorBDe
 
dimParents - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
dimParents - Variable in class edu.duke.cs.banjo.learner.components.EquivalenceCheckerBasic
 
dimParents - Variable in class edu.duke.cs.banjo.learner.components.ProposerRandomLocalMove.EdgesAsArraySelector
 
dimVariables - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
dimVariables - Variable in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
dimVariables - Variable in class edu.duke.cs.banjo.learner.components.EquivalenceCheckerBasic
 
dimVariables - Variable in class edu.duke.cs.banjo.learner.components.EvaluatorBDe
 
dimVariables - Variable in class edu.duke.cs.banjo.learner.components.ProposerRandomLocalMove.EdgesAsArraySelector
 
directoryName - Variable in class edu.duke.cs.banjo.data.observations.PreprocessedObservationsWithFileInfo
 
discreteValuesMap - Variable in class edu.duke.cs.banjo.data.observations.DataPreparerBasic
 
discreteValuesMap - Variable in class edu.duke.cs.banjo.data.observations.Discretizer
 
discretizationPoints - Variable in class edu.duke.cs.banjo.data.observations.DataPreparerBasic
 
discretizationPoints - Variable in class edu.duke.cs.banjo.data.observations.Discretizer
 
discretizationType - Variable in class edu.duke.cs.banjo.data.observations.DataPreparerBasic
 
discretizeData() - Method in class edu.duke.cs.banjo.data.observations.DataPreparer
 
discretizeData() - Method in class edu.duke.cs.banjo.data.observations.DataPreparerBasic
 
discretizeData() - Method in interface edu.duke.cs.banjo.data.observations.DataPreparerI
 
displayBasicStackTrace(Throwable) - Method in class edu.duke.cs.banjo.utility.BanjoErrorHandler
 
displayFeedbackByTime - Variable in class edu.duke.cs.banjo.learner.Searcher
 
displayMemoryInfo - Variable in class edu.duke.cs.banjo.learner.Searcher
 
displayPercent - Variable in class edu.duke.cs.banjo.learner.Searcher.SearchTerminator
 
dynamicProcessParameters - Variable in class edu.duke.cs.banjo.data.settings.Settings
 

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