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PATTERN_DISCRETIZATIONEXCEPTIONS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_DISCRETIZATIONEXCEPTION_ITEM
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_DYNAMICBAYESNET
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_DYNAMICBAYESNETITEM
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_INTEGERLIST
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_OBSERVATIONSPARSING_WHITESPACE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_STATICBAYESNET
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_STRINGLIST
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARCOUNT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARIABLENAMESCHECKFORCOLON
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARIABLENAMESCHECKFORCOMMAS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARIABLENAMESPARSING_DELS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARIABLENAMESPARSING_WHITESPACE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARIABLENAMESSPECIALDELIMITER
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PATTERN_VARIABLENAMES_SPECIALSPECIFIER
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
PostProcessor
- class edu.duke.cs.banjo.utility.
PostProcessor
.
Contains the (optional) post-processing actions.
PostProcessor(Settings)
- Constructor for class edu.duke.cs.banjo.utility.
PostProcessor
PreProcessor
- class edu.duke.cs.banjo.utility.
PreProcessor
.
Contains the pre-processing actions (not yet implemented).
PreProcessor(Settings)
- Constructor for class edu.duke.cs.banjo.utility.
PreProcessor
PreprocessedObservations
- class edu.duke.cs.banjo.data.observations.
PreprocessedObservations
.
Contains a single, basic, set of observation data (usually supplied by a single file).
PreprocessedObservations(Settings)
- Constructor for class edu.duke.cs.banjo.data.observations.
PreprocessedObservations
PreprocessedObservationsWithFileInfo
- class edu.duke.cs.banjo.data.observations.
PreprocessedObservationsWithFileInfo
.
Contains a single, basic, set of observation data (usually supplied by a single file).
PreprocessedObservationsWithFileInfo(Settings)
- Constructor for class edu.duke.cs.banjo.data.observations.
PreprocessedObservationsWithFileInfo
Proposer
- class edu.duke.cs.banjo.learner.components.
Proposer
.
Combines common code shared by the different proposer implementations.
Proposer(BayesNetManagerI, Settings)
- Constructor for class edu.duke.cs.banjo.learner.components.
Proposer
Proposer.AllowEdgeReversalSelector
- class edu.duke.cs.banjo.learner.components.
Proposer.AllowEdgeReversalSelector
.
Proposer.AllowEdgeReversalSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
Proposer.AllowEdgeReversalSelector
Proposer.EdgeSelector
- class edu.duke.cs.banjo.learner.components.
Proposer.EdgeSelector
.
Proposer.EdgeSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
Proposer.EdgeSelector
Proposer.OmitEdgeReversalSelector
- class edu.duke.cs.banjo.learner.components.
Proposer.OmitEdgeReversalSelector
.
Proposer.OmitEdgeReversalSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
Proposer.OmitEdgeReversalSelector
Proposer.StructureSelector
- class edu.duke.cs.banjo.learner.components.
Proposer.StructureSelector
.
Proposer.StructureSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
Proposer.StructureSelector
ProposerAllLocalMoves
- class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves
.
Proposes a list of all BayesNetChanges that can be applied in a single step (using addition, deletion, or reversal of a single edge), based on the current network configuration.
ProposerAllLocalMoves(BayesNetManagerI, Settings)
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves
ProposerAllLocalMoves.EdgesAsArraySelector
- class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsArraySelector
.
ProposerAllLocalMoves.EdgesAsArraySelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsArraySelector
ProposerAllLocalMoves.EdgesAsMatrixSelector
- class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsMatrixSelector
.
ProposerAllLocalMoves.EdgesAsMatrixSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsMatrixSelector
ProposerAllLocalMoves.multipleMovesStructureSelector
- class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.multipleMovesStructureSelector
.
ProposerAllLocalMoves.multipleMovesStructureSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.multipleMovesStructureSelector
ProposerI
- interface edu.duke.cs.banjo.learner.components.
ProposerI
.
Documents the interface for creating a proposer implementation.
ProposerRandomLocalMove
- class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove
.
Proposes a single potential BayesNetChange based on the current network configuration.
ProposerRandomLocalMove(BayesNetManagerI, Settings)
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove
ProposerRandomLocalMove.EdgesAsArraySelector
- class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsArraySelector
.
ProposerRandomLocalMove.EdgesAsArraySelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsArraySelector
ProposerRandomLocalMove.EdgesAsMatrixSelector
- class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsMatrixSelector
.
ProposerRandomLocalMove.EdgesAsMatrixSelector()
- Constructor for class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsMatrixSelector
parentCount
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
parentCount(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
parentCount
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
parentCount(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
parentCount(int)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
parentIDlist
- Variable in class edu.duke.cs.banjo.bayesnet.
NodeScoreCacheItem
parentIDs
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
parentIDs
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
parentNodeID
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetChange
parentNodeLag
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetChange
parseForTokens(String)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
parseForTokensAfterValidation(String)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
passedInParameters
- Variable in class edu.duke.cs.banjo.data.settings.
Settings
pattern
- Variable in class edu.duke.cs.banjo.utility.
JZOOWildCardFilter
percentLevel
- Variable in class edu.duke.cs.banjo.learner.
Searcher
percentPaddingLength
- Variable in class edu.duke.cs.banjo.learner.
Searcher
placedInCacheScoreTracker
- Variable in class edu.duke.cs.banjo.learner.components.
Evaluator
postProcessor
- Variable in class edu.duke.cs.banjo.application.
BanjoThreadHandler
potentialParentMatrix
- Variable in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsArraySelector
potentialParentMatrix
- Variable in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsMatrixSelector
preProcessor
- Variable in class edu.duke.cs.banjo.application.
BanjoThreadHandler
prefix
- Variable in class edu.duke.cs.banjo.learner.
Searcher
prepareData()
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsArray
Prepares the observations by applying an (optional) discretization.
prepareData()
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsMatrix
Prepares the observations by applying an (optional) discretization.
prepareFileOutput()
- Method in class edu.duke.cs.banjo.data.settings.
Settings
prepareReport()
- Method in class edu.duke.cs.banjo.data.observations.
DataPreparer
prepareReport()
- Method in class edu.duke.cs.banjo.data.observations.
DataPreparerBasic
prepareReport()
- Method in interface edu.duke.cs.banjo.data.observations.
DataPreparerI
prepareResultsFile()
- Method in class edu.duke.cs.banjo.utility.
FileUtil
prepareXMLOutput()
- Method in class edu.duke.cs.banjo.data.settings.
Settings
prepareXMLResultsFile()
- Method in class edu.duke.cs.banjo.utility.
FileUtil
preprocessedObservationsWithFileInfo
- Variable in class edu.duke.cs.banjo.data.observations.
Observations
printSystemSettings()
- Static method in class edu.duke.cs.banjo.utility.
XMLProcessor
printWriter
- Variable in class edu.duke.cs.banjo.utility.
FileUtil
processCommandLine(String[])
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Method to superseed the constructor with command line arguments.
processData
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetManager
processData
- Variable in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
processData
- Variable in class edu.duke.cs.banjo.data.observations.
DataPreparer
processData
- Variable in class edu.duke.cs.banjo.data.observations.
Observations
processData
- Variable in class edu.duke.cs.banjo.data.observations.
PreprocessedObservations
processData
- Variable in class edu.duke.cs.banjo.learner.
Searcher
processData
- Variable in class edu.duke.cs.banjo.learner.components.
CycleChecker
processData
- Variable in class edu.duke.cs.banjo.learner.components.
Decider
processData
- Variable in class edu.duke.cs.banjo.learner.components.
EquivalenceChecker
processData
- Variable in class edu.duke.cs.banjo.learner.components.
Evaluator
processData
- Variable in class edu.duke.cs.banjo.learner.components.
Proposer
processData
- Variable in class edu.duke.cs.banjo.learner.components.
Recorder
processData
- Variable in class edu.duke.cs.banjo.utility.
BanjoErrorHandler
processData
- Variable in class edu.duke.cs.banjo.utility.
FileUtil
processData
- Variable in class edu.duke.cs.banjo.utility.
InfluenceScorer
processData
- Static variable in class edu.duke.cs.banjo.utility.
StringUtil
processSetting(String, String, String, String, int, Object, Object)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Processes the supplied setting.
processXMLResultFiles(String[])
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor
processedSettings
- Variable in class edu.duke.cs.banjo.data.settings.
Settings
processingInstruction(String, String)
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
proposedChangeTypeTracker
- Variable in class edu.duke.cs.banjo.learner.components.
Proposer
proposer
- Variable in class edu.duke.cs.banjo.learner.
Searcher
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.
Searcher
provideCollectedStatistics()
- Method in interface edu.duke.cs.banjo.learner.
SearcherI
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
CycleChecker
provideCollectedStatistics()
- Method in interface edu.duke.cs.banjo.learner.components.
CycleCheckerI
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
Decider
Collects a basic set of decider-related statistics that any subclass can use as default.
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
DeciderGreedy
provideCollectedStatistics()
- Method in interface edu.duke.cs.banjo.learner.components.
DeciderI
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
DeciderMetropolis
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
EquivalenceChecker
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
EquivalenceCheckerBasic
provideCollectedStatistics()
- Method in interface edu.duke.cs.banjo.learner.components.
EquivalenceCheckerI
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
EquivalenceCheckerSkip
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
Evaluator
provideCollectedStatistics()
- Method in interface edu.duke.cs.banjo.learner.components.
EvaluatorI
provideCollectedStatistics()
- Method in class edu.duke.cs.banjo.learner.components.
Proposer
provideCollectedStatistics()
- Method in interface edu.duke.cs.banjo.learner.components.
ProposerI
pruneEquivalentNetworks()
- Method in class edu.duke.cs.banjo.learner.
Searcher
Prunes the set of "current" high-scoring networks into the set of non-equivalent ones
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