A B C D E F G H I J L M N O P R S T U V W X

R

RELEASE - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
RELEASE_ALLRIGHTS - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
RELEASE_COPYRIGHT - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
RELEASE_LICENCED - Static variable in class edu.duke.cs.banjo.utility.BANJO
 
Recorder - class edu.duke.cs.banjo.learner.components.Recorder.
Combines the common code shared by the different statistics implementations.
Recorder(Settings) - Constructor for class edu.duke.cs.banjo.learner.components.Recorder
 
RecorderI - interface edu.duke.cs.banjo.learner.components.RecorderI.
Documents the interface for creating a statistics implementation for describing the progress and results of the search algorithms.
RecorderStandard - class edu.duke.cs.banjo.learner.components.RecorderStandard.
Provides a set of "standard" statistics describing the progress and results of the search algorithms.
RecorderStandard(Settings) - Constructor for class edu.duke.cs.banjo.learner.components.RecorderStandard
 
RunBasicSearchExample - class edu.duke.cs.banjo.application.RunBasicSearchExample.
Details:
"Hello World" example on how to access the Banjo classes.
RunBasicSearchExample() - Constructor for class edu.duke.cs.banjo.application.RunBasicSearchExample
 
randomSequence - Variable in class edu.duke.cs.banjo.utility.BanjoRandomNumber
 
reannealingTemperature - Variable in class edu.duke.cs.banjo.learner.SearcherSimAnneal
 
reconstructMatrix(String, int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
reconstructMatrix(String, int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
reconstructMatrix(String, int, int, int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
reconstructMatrixStatic(String, int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
reconstructMatrixStatic(String, int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
reconstructMatrixStatic(String, int, int, int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
recordError(String) - Method in class edu.duke.cs.banjo.data.settings.Settings
 
recordError(String) - Method in class edu.duke.cs.banjo.utility.FileUtil
 
recordFinalData(SearcherI) - Method in class edu.duke.cs.banjo.learner.components.Recorder
 
recordFinalData(SearcherI) - Method in interface edu.duke.cs.banjo.learner.components.RecorderI
 
recordFinalData(SearcherI) - Method in class edu.duke.cs.banjo.learner.components.RecorderStandard
 
recordInitialData(SearcherI) - Method in class edu.duke.cs.banjo.learner.components.Recorder
 
recordInitialData(SearcherI) - Method in interface edu.duke.cs.banjo.learner.components.RecorderI
 
recordInitialData(SearcherI) - Method in class edu.duke.cs.banjo.learner.components.RecorderStandard
 
recordRecurringData(SearcherI) - Method in class edu.duke.cs.banjo.learner.components.Recorder
 
recordRecurringData(SearcherI) - Method in interface edu.duke.cs.banjo.learner.components.RecorderI
 
recordRecurringData(SearcherI) - Method in class edu.duke.cs.banjo.learner.components.RecorderStandard
 
recordSpecifiedData(StringBuffer) - Method in class edu.duke.cs.banjo.learner.components.Recorder
 
recordSpecifiedData(StringBuffer) - Method in interface edu.duke.cs.banjo.learner.components.RecorderI
 
recordSpecifiedData(StringBuffer) - Method in class edu.duke.cs.banjo.learner.components.RecorderStandard
 
registeredSettings - Variable in class edu.duke.cs.banjo.data.settings.Settings
 
releaseStagingData() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
Releases the data structures used for storing the original "raw" data (as loaded from file in String format).
releaseStagingData() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
Releases the data structures used for storing the original "raw" data (as loaded from file in String format).
removeTrailingComment(String) - Static method in class edu.duke.cs.banjo.utility.StringUtil
Utility method: Removes comments at the end of a line of text.
resetChange() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetChange
 
resetChange() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetChangeI
Special case of update.
resetCycleAtNode() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
resetEntireGraph() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinder
 
resetEntireGraph() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFS
 
resetEntireGraph() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSorig
 
resetEntireGraph() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSwithShmueli
 
resetEntireGraph() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
resetEntireGraph() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
resetEntireGraph() - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
resetRoundNum() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
restartCount - Variable in class edu.duke.cs.banjo.learner.Searcher
 
restartPaddingLength - Variable in class edu.duke.cs.banjo.learner.Searcher
 
restartWithRandomNetwork - Variable in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
restartWithRandomNetwork - Variable in class edu.duke.cs.banjo.learner.Searcher
 
restartsAtCounts - Variable in class edu.duke.cs.banjo.learner.Searcher
 
resultBuffer - Variable in class edu.duke.cs.banjo.learner.components.Recorder
 
retrievedNodeScoreHashItem - Variable in class edu.duke.cs.banjo.learner.components.Evaluator
 
reverseRelation(int, int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
reverseRelation(int, int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
reverseRelation(int, int, int, int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
rnd - Variable in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
rnd - Variable in class edu.duke.cs.banjo.learner.components.Decider
 
rnd - Variable in class edu.duke.cs.banjo.learner.components.Proposer
 
round - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFS
 
round - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSwithShmueli
 
roundNumCounter - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSwithShmueli
 
roundOnlyCounter - Variable in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics.CycleFinderDFSwithShmueli
 
run() - Method in class edu.duke.cs.banjo.application.Banjo.SearchInstance
 
runMultipleInstances(String[]) - Method in class edu.duke.cs.banjo.application.Banjo
 
runSearch() - Method in class edu.duke.cs.banjo.application.BanjoThreadHandler
Sets up, then initiates the execution of the Banjo application.

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