Package edu.duke.cs.banjo.utility

Class Summary
BANJO Defines all constants (numeric, string, etc) used by Banjo.
BanjoError Used for tracking multiple internal "errors", e.g., while trying to validate the user input.
BanjoErrorHandler Combines the exception handling for various front-end classes.
BanjoRandomNumber Basic utility class for providing random sequences, based on either a fixed seed or a system time-based seed.
FileUtil Handles all file input and output for the application.
InfluenceScorer Computes the influence score for all the edges in a network, based on the work of Jing Yu and Alexander Hartemink, as published in Yu, et al., Bioinformatics (2004).
JZOOWildCardFilter  
NBestProcessor  
PostProcessor Contains the (optional) post-processing actions.
PreProcessor Contains the pre-processing actions (not yet implemented).
StringUtil Contains a collection of general purpose string-related code.
XMLProcessor  
 

Exception Summary
BanjoException Defines the exceptions that the application generates.