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SETTING_ASKTOVERIFYSETTINGS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_ASKTOVERIFYSETTINGS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_ASKTOVERIFYSETTINGS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_BANJOSEED
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_BANJOSEED_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_BANJOSEED_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_BESTNETWORKSARE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_BESTNETWORKSARE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_BESTNETWORKSARE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CMDARG_SETTINGSDIRECTORY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CMDARG_SETTINGSDIRECTORY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CMDARG_SETTINGSFILENAME
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CMDARG_SETTINGSFILENAME_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CMDARG_SETTINGSFILENAME_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COMPUTECONSENSUSGRAPH
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COMPUTECONSENSUSGRAPH_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COMPUTECONSENSUSGRAPH_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COMPUTEINFLUENCESCORES
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COMPUTEINFLUENCESCORES_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COMPUTEINFLUENCESCORES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COOLINGFACTOR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COOLINGFACTOR_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_COOLINGFACTOR_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CREATEDOTOUTPUT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CREATEDOTOUTPUT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CREATEDOTOUTPUT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CYCLECHECKERCHOICE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CYCLECHECKERCHOICE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_CYCLECHECKERCHOICE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DATAREPORT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DATASET
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DATASET_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DATASET_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DBNMANDATORYIDENTITYLAGS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DBNMANDATORYIDENTITYLAGS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DBNMANDATORYIDENTITYLAGS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DBNMANDATORYIDENTITYLAGS_NONE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DECIDERCHOICE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DECIDERCHOICE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DECIDERCHOICE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEFAULTMAXPARENTCOUNT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEFAULTMAXPARENTCOUNT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEFAULTMAXPARENTCOUNT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEFAULT_DEBUGINFO
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEFAULT_THREADS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEPREC_NUMBEROFINTERMEDIATEPROGRESSREPORTS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DEPREC_WRITETOFILEINTERVAL
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONEXCEPTIONS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONEXCEPTIONS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONEXCEPTIONS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONEXCEPTIONS_NONE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONPOLICY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONPOLICY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONPOLICY_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISCRETIZATIONREPORT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYCONSENSUSGRAPHASHTML
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYCONSENSUSGRAPHASHTML_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYCONSENSUSGRAPHASHTML_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYDEBUGINFO
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYDEBUGINFO_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYDEBUGINFO_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYMEMORYINFO
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYMEMORYINFO_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYMEMORYINFO_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYSTATISTICS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYSTATISTICS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYSTATISTICS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYSTRUCTURES
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYSTRUCTURES_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DISPLAYSTRUCTURES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DOTFILEEXTENSION
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DOTFILEEXTENSION_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DOTFILEEXTENSION_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DOTGRAPHICSFORMAT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DOTGRAPHICSFORMAT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_DOTGRAPHICSFORMAT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_EQUIVALENTSAMPLESIZE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_EQUIVALENTSAMPLESIZE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_EQUIVALENTSAMPLESIZE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_ERRORDIRECTORY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_ERRORDIRECTORY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_ERRORFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_EVALUATORCHOICE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_EVALUATORCHOICE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_EVALUATORCHOICE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORCONSENSUSGRAPH
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORCONSENSUSGRAPH_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORCONSENSUSGRAPH_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORTOPGRAPH
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORTOPGRAPHSASHTML
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORTOPGRAPHSASHTML_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORTOPGRAPHSASHTML_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORTOPGRAPH_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEFORTOPGRAPH_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEPREFIXFORTHREADS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEPREFIXFORTHREADS_DEFAULT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEPREFIXFORTHREADS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILENAMEPREFIXFORTHREADS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILEREPORTINGINTERVAL
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILEREPORTINGINTERVAL_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FILEREPORTINGINTERVAL_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FULLPATHTODOTEXECUTABLE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FULLPATHTODOTEXECUTABLE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_FULLPATHTODOTEXECUTABLE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_HTMLFILEEXTENSION
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_HTMLFILEEXTENSION_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_HTMLFILEEXTENSION_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INITIALSTRUCTUREFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INITIALSTRUCTUREFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INITIALSTRUCTUREFILE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INITIALTEMPERATURE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INITIALTEMPERATURE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INITIALTEMPERATURE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INPUTDIRECTORY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INPUTDIRECTORY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_INPUTDIRECTORY_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXACCEPTEDNETWORKSBEFORECOOLING
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXACCEPTEDNETWORKSBEFORECOOLING_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXACCEPTEDNETWORKSBEFORECOOLING_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXMARKOVLAG
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXMARKOVLAG_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXMARKOVLAG_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPARENTCOUNT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPARENTCOUNTFORRESTART
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPARENTCOUNTFORRESTART_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPARENTCOUNTFORRESTART_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPARENTCOUNT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPARENTCOUNT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKSBEFORECOOLING
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKSBEFORECOOLING_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKSBEFORECOOLING_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKSBEFORERESTART
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKSBEFORERESTART_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKSBEFORERESTART_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXPROPOSEDNETWORKS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXRESTARTS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXRESTARTS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXRESTARTS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXSEARCHTIME
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXSEARCHTIME_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXSEARCHTIME_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MAXTHREADS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINACCEPTEDNETWORKSBEFOREREANNEALING
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINACCEPTEDNETWORKSBEFOREREANNEALING_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINACCEPTEDNETWORKSBEFOREREANNEALING_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINMARKOVLAG
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINMARKOVLAG_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINMARKOVLAG_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINNETWORKSBEFORECHECKING
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINNETWORKSBEFORECHECKING_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINNETWORKSBEFORECHECKING_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINPROPOSEDNETWORKSAFTERHIGHSCORE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINPROPOSEDNETWORKSAFTERHIGHSCORE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINPROPOSEDNETWORKSAFTERHIGHSCORE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINPROPOSEDNETWORKSBEFORERESTART
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINPROPOSEDNETWORKSBEFORERESTART_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MINPROPOSEDNETWORKSBEFORERESTART_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MUSTBEPRESENTEDGESFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MUSTBEPRESENTEDGESFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MUSTBEPRESENTEDGESFILE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MUSTNOTBEPRESENTEDGESFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MUSTNOTBEPRESENTEDGESFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_MUSTNOTBEPRESENTEDGESFILE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_NBEST
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_NBEST_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_NBEST_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_NOTES
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_NOTES_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_NOTES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONCOUNT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONCOUNT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONCOUNT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILES_OMIT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILES_USED_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OBSERVATIONSFILE_WILDCARD_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OUTPUTDIRECTORY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OUTPUTDIRECTORY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_OUTPUTDIRECTORY_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PRECOMPUTE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PRECOMPUTE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PRECOMPUTE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PROJECT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PROJECT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PROJECT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PROPOSERCHOICE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PROPOSERCHOICE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_PROPOSERCHOICE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_REANNEALINGTEMPERATURE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_REANNEALINGTEMPERATURE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_REANNEALINGTEMPERATURE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_REPORTFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_REPORTFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_REPORTFILE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_RESTARTWITHRANDOMNETWORK
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_RESTARTWITHRANDOMNETWORK_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_RESTARTWITHRANDOMNETWORK_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SCREENREPORTINGINTERVAL
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SCREENREPORTINGINTERVAL_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SCREENREPORTINGINTERVAL_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SEARCHERCHOICE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SEARCHERCHOICE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SEARCHERCHOICE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_STATISTICDEFAULT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_STATISTICSCHOICE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_STATISTICSCHOICE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_STATISTICSCHOICE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SUMMARYFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_SUMMARYFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_THREADS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_THREADS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_THREADS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_TIMESTAMPSTRINGFORFILES
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_TIMESTAMPSTRINGFORFILES_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_TIMESTAMPSTRINGFORFILES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_TRACKINGFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_TRACKINGFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_USECACHE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_USECACHE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_USECACHE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_USER
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_USER_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_USER_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARCOUNT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARCOUNT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARCOUNT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARIABLENAMES
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARIABLENAMES_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARIABLENAMES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARIABLESAREINROWS
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARIABLESAREINROWS_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_VARIABLESAREINROWS_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLINPUTDIRECTORY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLINPUTDIRECTORY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLINPUTDIRECTORY_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLINPUTFILES
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLINPUTFILES_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLINPUTFILES_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLOUTPUTDIRECTORY
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLOUTPUTDIRECTORY_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLOUTPUTDIRECTORY_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLREPORTFILE
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLREPORTFILE_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLREPORTFILE_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLSETTINGSTOEXPORT
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLSETTINGSTOEXPORT_DESCR
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
SETTING_XMLSETTINGSTOEXPORT_DISP
- Static variable in class edu.duke.cs.banjo.utility.
BANJO
Searcher
- class edu.duke.cs.banjo.learner.
Searcher
.
Combines common code shared by the different searcher implementations.
Searcher(Settings)
- Constructor for class edu.duke.cs.banjo.learner.
Searcher
Constructor for instantiating the objects shared between searcher implementations.
Searcher.HighScoreSetUpdater
- class edu.duke.cs.banjo.learner.
Searcher.HighScoreSetUpdater
.
Base class of inner classes for updating the score info for a search.
Searcher.HighScoreSetUpdater()
- Constructor for class edu.duke.cs.banjo.learner.
Searcher.HighScoreSetUpdater
Searcher.SearchExecuter
- class edu.duke.cs.banjo.learner.
Searcher.SearchExecuter
.
Base class of inner classes for executing a search.
Searcher.SearchExecuter()
- Constructor for class edu.duke.cs.banjo.learner.
Searcher.SearchExecuter
Searcher.SearchMultipleTerminator
- class edu.duke.cs.banjo.learner.
Searcher.SearchMultipleTerminator
.
Subclass class of inner classes for terminating a search using possibly multiple criteria.
Searcher.SearchMultipleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
Searcher.SearchMultipleTerminator
Searcher.SearchTerminator
- class edu.duke.cs.banjo.learner.
Searcher.SearchTerminator
.
Base class of inner classes for terminating a search.
Searcher.SearchTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
Searcher.SearchTerminator
SearcherGreedy
- class edu.duke.cs.banjo.learner.
SearcherGreedy
.
Implements a greedy search.
SearcherGreedy(Settings)
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy
Constructor for the greedy searcher implementation.
SearcherGreedy.BasicHighScoreSetUpdater
- class edu.duke.cs.banjo.learner.
SearcherGreedy.BasicHighScoreSetUpdater
.
Inner class for tracking a set of N-best (N>1) scoring networks.
SearcherGreedy.BasicHighScoreSetUpdater()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.BasicHighScoreSetUpdater
SearcherGreedy.DoubleTerminator
- class edu.duke.cs.banjo.learner.
SearcherGreedy.DoubleTerminator
.
Inner class for terminating a search with 2 termination criteria.
SearcherGreedy.DoubleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.DoubleTerminator
SearcherGreedy.GlobalSearchExecuter
- class edu.duke.cs.banjo.learner.
SearcherGreedy.GlobalSearchExecuter
.
Inner class for executing a search based on a set of local changes.
SearcherGreedy.GlobalSearchExecuter()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.GlobalSearchExecuter
SearcherGreedy.IterationsTerminator
- class edu.duke.cs.banjo.learner.
SearcherGreedy.IterationsTerminator
.
Inner class for terminating a search based on a limit on the number of iterations.
SearcherGreedy.IterationsTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.IterationsTerminator
SearcherGreedy.LocalSearchExecuter
- class edu.duke.cs.banjo.learner.
SearcherGreedy.LocalSearchExecuter
.
Inner class for executing a search based on a single local change.
SearcherGreedy.LocalSearchExecuter()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.LocalSearchExecuter
SearcherGreedy.RestartsTerminator
- class edu.duke.cs.banjo.learner.
SearcherGreedy.RestartsTerminator
.
Inner class for terminating a search based on a limit on the number of restarts.
SearcherGreedy.RestartsTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.RestartsTerminator
SearcherGreedy.SingleHighScoreUpdater
- class edu.duke.cs.banjo.learner.
SearcherGreedy.SingleHighScoreUpdater
.
Inner class for tracking a single high-scoring network
SearcherGreedy.SingleHighScoreUpdater()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.SingleHighScoreUpdater
SearcherGreedy.SingleTerminator
- class edu.duke.cs.banjo.learner.
SearcherGreedy.SingleTerminator
.
Inner class for terminating a search with 1 termination criterion.
SearcherGreedy.SingleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.SingleTerminator
SearcherGreedy.TimeTerminator
- class edu.duke.cs.banjo.learner.
SearcherGreedy.TimeTerminator
.
Inner class for terminating a search based on a limit on the search time.
SearcherGreedy.TimeTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.TimeTerminator
SearcherGreedy.TripleTerminator
- class edu.duke.cs.banjo.learner.
SearcherGreedy.TripleTerminator
.
Inner class for terminating a search with 3 termination criteria.
SearcherGreedy.TripleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherGreedy.TripleTerminator
SearcherI
- interface edu.duke.cs.banjo.learner.
SearcherI
.
Documents the interface for creating a searcher implementation.
SearcherSimAnneal
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal
.
Implements a simulated annealing-based search.
SearcherSimAnneal(Settings)
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal
Constructor for the simulated annealing searcher implementation.
SearcherSimAnneal.BasicHighScoreSetUpdater
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.BasicHighScoreSetUpdater
.
Inner class for tracking a set of N-best (N>1) scoring networks.
SearcherSimAnneal.BasicHighScoreSetUpdater()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.BasicHighScoreSetUpdater
SearcherSimAnneal.DoubleTerminator
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.DoubleTerminator
.
Inner class for terminating a search with 2 termination criteria.
SearcherSimAnneal.DoubleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.DoubleTerminator
SearcherSimAnneal.GlobalSearchExecuter
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.GlobalSearchExecuter
.
Inner class for executing a search based on a set of local changes.
SearcherSimAnneal.GlobalSearchExecuter()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.GlobalSearchExecuter
SearcherSimAnneal.IterationsTerminator
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.IterationsTerminator
.
Inner class for terminating a search based on a limit on the number of iterations.
SearcherSimAnneal.IterationsTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.IterationsTerminator
SearcherSimAnneal.LocalSearchExecuter
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.LocalSearchExecuter
.
SearcherSimAnneal.LocalSearchExecuter()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.LocalSearchExecuter
SearcherSimAnneal.RestartsTerminator
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.RestartsTerminator
.
Inner class for terminating a search based on a limit on the number of restarts.
SearcherSimAnneal.RestartsTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.RestartsTerminator
SearcherSimAnneal.SingleHighScoreUpdater
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.SingleHighScoreUpdater
.
Inner class for tracking a single high-scoring network
SearcherSimAnneal.SingleHighScoreUpdater()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.SingleHighScoreUpdater
SearcherSimAnneal.SingleTerminator
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.SingleTerminator
.
Inner class for terminating a search with 1 termination criterion.
SearcherSimAnneal.SingleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.SingleTerminator
SearcherSimAnneal.TimeTerminator
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.TimeTerminator
.
Inner class for terminating a search based on a limit on the search time.
SearcherSimAnneal.TimeTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.TimeTerminator
SearcherSimAnneal.TripleTerminator
- class edu.duke.cs.banjo.learner.
SearcherSimAnneal.TripleTerminator
.
Inner class for terminating a search with 3 termination criteria.
SearcherSimAnneal.TripleTerminator()
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSimAnneal.TripleTerminator
SearcherSkip
- class edu.duke.cs.banjo.learner.
SearcherSkip
.
This searcher is only setting up as much of the bayesnet structures as is necessary to prepare for the post-processing, without actually having to go through a search.
SearcherSkip(Settings)
- Constructor for class edu.duke.cs.banjo.learner.
SearcherSkip
SettingItem
- class edu.duke.cs.banjo.data.settings.
SettingItem
.
Holds an individual setting that is loaded into Banjo.
SettingItem(String, String, String)
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem
SettingItem(SettingItem)
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem
Constructor based on an existing settingItem.
SettingItem.DataTypeValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.DataTypeValidator
.
SettingItem.DataTypeValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.DataTypeValidator
SettingItem.DiscretizationExceptionsValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.DiscretizationExceptionsValidator
.
SettingItem.DiscretizationExceptionsValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.DiscretizationExceptionsValidator
SettingItem.DiscretizationPolicyValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.DiscretizationPolicyValidator
.
SettingItem.DiscretizationPolicyValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.DiscretizationPolicyValidator
SettingItem.DoubleValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.DoubleValidator
.
SettingItem.DoubleValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.DoubleValidator
SettingItem.FileValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.FileValidator
.
SettingItem.FileValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.FileValidator
SettingItem.IntegerListValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.IntegerListValidator
.
SettingItem.IntegerListValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.IntegerListValidator
SettingItem.IntegerValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.IntegerValidator
.
SettingItem.IntegerValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.IntegerValidator
SettingItem.LongValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.LongValidator
.
SettingItem.LongValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.LongValidator
SettingItem.PathValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.PathValidator
.
SettingItem.PathValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.PathValidator
SettingItem.StringValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.StringValidator
.
SettingItem.StringValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.StringValidator
SettingItem.TimeStampValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.TimeStampValidator
.
SettingItem.TimeStampValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.TimeStampValidator
SettingItem.TimeValidator
- class edu.duke.cs.banjo.data.settings.
SettingItem.TimeValidator
.
SettingItem.TimeValidator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.TimeValidator
SettingItem.Validator
- class edu.duke.cs.banjo.data.settings.
SettingItem.Validator
.
SettingItem.Validator()
- Constructor for class edu.duke.cs.banjo.data.settings.
SettingItem.Validator
Settings
- class edu.duke.cs.banjo.data.settings.
Settings
.
Manages the initial, validated, and dynamically updated parameters that are used by the various search algorithms.
Settings()
- Constructor for class edu.duke.cs.banjo.data.settings.
Settings
Basic constructor that simply sets up the internal data for the settings object.
Settings(Settings)
- Constructor for class edu.duke.cs.banjo.data.settings.
Settings
Constructor based on an existing settings.
Settings(Settings, int)
- Constructor for class edu.duke.cs.banjo.data.settings.
Settings
Constructor based on an existing settings.
StringUtil
- class edu.duke.cs.banjo.utility.
StringUtil
.
Contains a collection of general purpose string-related code.
StringUtil()
- Constructor for class edu.duke.cs.banjo.utility.
StringUtil
(Empty) constructor for static StringUtil class.
scoreDiff
- Variable in class edu.duke.cs.banjo.learner.components.
EvaluatorBDe
scoreDiff
- Variable in class edu.duke.cs.banjo.utility.
InfluenceScorer
screenReportInterval
- Variable in class edu.duke.cs.banjo.learner.
Searcher
screenReportTimeDelta
- Variable in class edu.duke.cs.banjo.learner.
Searcher
searchExecuter
- Variable in class edu.duke.cs.banjo.learner.
Searcher
searchLoopIndex
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
searchLoopsRemaining
- Variable in class edu.duke.cs.banjo.learner.
SearcherGreedy.IterationsTerminator
searchLoopsRemaining
- Variable in class edu.duke.cs.banjo.learner.
SearcherSimAnneal.IterationsTerminator
searchTerminator
- Variable in class edu.duke.cs.banjo.learner.
Searcher
searcher
- Variable in class edu.duke.cs.banjo.application.
BanjoThreadHandler
searcherStatistics
- Variable in class edu.duke.cs.banjo.learner.
Searcher
searcherStats
- Variable in class edu.duke.cs.banjo.learner.
Searcher
selectorChangeTypeCount
- Variable in class edu.duke.cs.banjo.learner.components.
Proposer.EdgeSelector
serialVersionUID
- Static variable in class edu.duke.cs.banjo.utility.
BanjoException
setBanjoSeed(long)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
setBanjoSeed(long)
- Method in class edu.duke.cs.banjo.utility.
BanjoRandomNumber
setChangeStatus(int)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetChange
setChangeStatus(int)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetChangeI
The status of a BayesNetChange may change over the search process.
setCurrentParents(EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetManager
setCurrentParents(EdgesWithCachedStatisticsI)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetManagerI
setCurrentScore(double)
- Method in class edu.duke.cs.banjo.learner.components.
Decider
setCurrentScore(double)
- Method in interface edu.duke.cs.banjo.learner.components.
DeciderI
Sets the score of the current network.
setCycleAtNode(int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
setDefaultValueUsed(boolean)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setDocumentLocator(Locator)
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
setDynamicProcessParameter(String, String)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Sets the dynamic process parameter to the supplied value.
setEntry(int, int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArray
setEntry(int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
setEntry(int, int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
setEntry(int, int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrix
setEntry(int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
setEntry(int, int, int, int)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
setEntry(int, int, int, int)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesI
setEntry(int, int, int)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
setEntry(int, int, int, int)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
setHighScoreStructureSet(TreeSet)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
setItemNameFormattedForDisplay(String)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setItemValueAsLoaded(String)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setItemValueValidated(String)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setMatrix(int[])
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArray
setMatrix(int[][][])
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrix
setMessage(String)
- Method in class edu.duke.cs.banjo.utility.
BanjoException
setNBestMax(long)
- Method in class edu.duke.cs.banjo.utility.
NBestProcessor
setNetworkScore(double)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
setNetworkScore(double)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetStructureI
setNetworkStructure(EdgesI)
- Method in class edu.duke.cs.banjo.bayesnet.
BayesNetStructure
setNetworkStructure(EdgesI)
- Method in interface edu.duke.cs.banjo.bayesnet.
BayesNetStructureI
setObjItemInfo(Object)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setObjItemValue(Object)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setObservationDataPoints(int[])
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsArray
setObservationDataPoints(int[][][])
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsMatrix
setObservationValue(int, int, int, int)
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsArray
setObservationValue(int, int, int, int)
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsMatrix
setObservationValue(int, int, int, int)
- Method in interface edu.duke.cs.banjo.data.observations.
ObservationsI
setObservations(ObservationsI)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
setProcessData(Settings)
- Static method in class edu.duke.cs.banjo.utility.
StringUtil
Provides access to the (main) settings.
setStrRawObservationDataPoints(String[][])
- Method in class edu.duke.cs.banjo.data.observations.
PreprocessedObservations
setToCombinedMatrices(EdgesWithCachedStatisticsI, EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
setToCombinedMatrices(EdgesWithCachedStatisticsI, EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
setToCombinedMatrices(EdgesWithCachedStatisticsI, EdgesWithCachedStatisticsI)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
setTraceFileName(int, String)
- Method in class edu.duke.cs.banjo.utility.
FileUtil
setValidSetting(boolean)
- Method in class edu.duke.cs.banjo.data.settings.
SettingItem
setValidatedProcessParameter(String, String)
- Method in class edu.duke.cs.banjo.data.settings.
Settings
Sets the validated process parameter (setting) to the supplied value.
setVariableNames(String[])
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsArray
setVariableNames(String[])
- Method in class edu.duke.cs.banjo.data.observations.
ObservationsAsMatrix
setVariableNames(String[])
- Method in interface edu.duke.cs.banjo.data.observations.
ObservationsI
settingName
- Variable in class edu.duke.cs.banjo.utility.
BanjoError
settings
- Variable in class edu.duke.cs.banjo.application.
Banjo
settings
- Variable in class edu.duke.cs.banjo.application.
BanjoThreadHandler
settings
- Variable in class edu.duke.cs.banjo.utility.
FileUtil
settings
- Variable in class edu.duke.cs.banjo.utility.
NBestProcessor
settings
- Variable in class edu.duke.cs.banjo.utility.
PostProcessor
settings
- Variable in class edu.duke.cs.banjo.utility.
PreProcessor
settings
- Variable in class edu.duke.cs.banjo.utility.
XMLProcessor
settingsUsedInThread
- Variable in class edu.duke.cs.banjo.application.
Banjo
setupFile(FileWriter, OutputStreamWriter, PrintWriter, String)
- Method in class edu.duke.cs.banjo.utility.
FileUtil
setupSearch()
- Method in class edu.duke.cs.banjo.learner.
SearcherGreedy
Set up the search, and compile various pieces of info about the search, to be used by the recorder.
setupSearch()
- Method in class edu.duke.cs.banjo.learner.
SearcherSimAnneal
Set up the search, and compile various pieces of info about the search, to be used by the recorder.
setupSearch()
- Method in class edu.duke.cs.banjo.learner.
SearcherSkip
sharedArgs
- Variable in class edu.duke.cs.banjo.application.
Banjo
sizeAfter
- Variable in class edu.duke.cs.banjo.learner.
SearcherGreedy.BasicHighScoreSetUpdater
sizeAfter
- Variable in class edu.duke.cs.banjo.learner.
SearcherSimAnneal.BasicHighScoreSetUpdater
sizeBefore
- Variable in class edu.duke.cs.banjo.learner.
SearcherGreedy.BasicHighScoreSetUpdater
sizeBefore
- Variable in class edu.duke.cs.banjo.learner.
SearcherSimAnneal.BasicHighScoreSetUpdater
sizeOfListOfChanges()
- Method in class edu.duke.cs.banjo.learner.
Searcher.SearchExecuter
sizeOfListOfChanges()
- Method in class edu.duke.cs.banjo.learner.
SearcherGreedy.GlobalSearchExecuter
sizeOfListOfChanges()
- Method in class edu.duke.cs.banjo.learner.
SearcherGreedy.LocalSearchExecuter
sizeOfListOfChanges()
- Method in class edu.duke.cs.banjo.learner.
SearcherSimAnneal.GlobalSearchExecuter
sizeOfListOfChanges()
- Method in class edu.duke.cs.banjo.learner.
SearcherSimAnneal.LocalSearchExecuter
skippedEntity(String)
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
specifiedObservationCount
- Variable in class edu.duke.cs.banjo.data.observations.
Observations
startDocument()
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
startElement(String, String, String, Attributes)
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
startPrefixMapping(String, String)
- Method in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
startTime
- Variable in class edu.duke.cs.banjo.learner.
Searcher
statisticsBuffer
- Variable in class edu.duke.cs.banjo.learner.components.
Recorder
storedArgs
- Variable in class edu.duke.cs.banjo.application.
BanjoThreadHandler
strBanjoSettings
- Variable in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
strDbnMandatoryIdentityLags
- Variable in class edu.duke.cs.banjo.bayesnet.
BayesNetManager
strHeader
- Static variable in class edu.duke.cs.banjo.learner.components.
Recorder
strNetworkScore
- Variable in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
strNetworkStructure
- Variable in class edu.duke.cs.banjo.utility.
XMLProcessor.TextExtractor
strOriginalDataPoints
- Variable in class edu.duke.cs.banjo.data.observations.
DataPreparer
strRawObservationDataPoints
- Variable in class edu.duke.cs.banjo.data.observations.
PreprocessedObservations
streamWriter
- Variable in class edu.duke.cs.banjo.utility.
FileUtil
structureSelector
- Variable in class edu.duke.cs.banjo.learner.components.
Proposer
subtractMatrix(EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsArrayWithCachedStatistics
subtractMatrix(EdgesWithCachedStatisticsI)
- Method in class edu.duke.cs.banjo.bayesnet.
EdgesAsMatrixWithCachedStatistics
subtractMatrix(EdgesWithCachedStatisticsI)
- Method in interface edu.duke.cs.banjo.bayesnet.
EdgesWithCachedStatisticsI
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
Proposer.StructureSelector
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
Proposer
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsMatrixSelector
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.multipleMovesStructureSelector
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves
suggestBayesNetChange(BayesNetManagerI)
- Method in interface edu.duke.cs.banjo.learner.components.
ProposerI
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsArraySelector
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsMatrixSelector
suggestBayesNetChange(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
Proposer.StructureSelector
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsArraySelector
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.EdgesAsMatrixSelector
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves.multipleMovesStructureSelector
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerAllLocalMoves
suggestBayesNetChanges(BayesNetManagerI)
- Method in interface edu.duke.cs.banjo.learner.components.
ProposerI
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsArraySelector
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove.EdgesAsMatrixSelector
suggestBayesNetChanges(BayesNetManagerI)
- Method in class edu.duke.cs.banjo.learner.components.
ProposerRandomLocalMove
suggestedBayesNetChange
- Variable in class edu.duke.cs.banjo.learner.
Searcher
suggestedChangeList
- Variable in class edu.duke.cs.banjo.learner.
Searcher
summaryBuffer
- Variable in class edu.duke.cs.banjo.learner.components.
Recorder
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