A B C D E F G H I J L M N O P R S T U V W X

G

generalProcessDataStorage - Variable in class edu.duke.cs.banjo.data.settings.Settings
 
generateFeedback() - Method in class edu.duke.cs.banjo.learner.Searcher.SearchMultipleTerminator
 
generateFeedback() - Method in class edu.duke.cs.banjo.learner.Searcher.SearchTerminator
 
getAddableParents() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getAddableParents() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetManagerI
 
getBanjoSeed() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getBanjoSeed() - Method in class edu.duke.cs.banjo.utility.BanjoRandomNumber
 
getBanjoSignature() - Static method in class edu.duke.cs.banjo.utility.StringUtil
Compiles the setting values that we group as the "Banjo signature".
getBayesNetManager() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getChangeStatus() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetChange
 
getChangeStatus() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetChangeI
 
getChangeType() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetChange
 
getChangeType() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetChangeI
 
getClassName(Object) - Static method in class edu.duke.cs.banjo.utility.StringUtil
Utility method: Returns the name of the class where this method is called from.
getCollectedErrors() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getCollectedErrors() - Method in class edu.duke.cs.banjo.data.settings.Settings
Get the set of collected errors.
getCollectedWarnings() - Method in class edu.duke.cs.banjo.data.settings.Settings
Get the set of collected warnings.
getCombinedParentCount() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
getCombinedParentCount() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
getCombinedParentCount() - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
getComparisonsSinceLastHighScore() - Method in class edu.duke.cs.banjo.learner.components.Decider
 
getCurrentNodeID() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetChange
 
getCurrentNodeID() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetChangeI
 
getCurrentParentIDlist(int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
getCurrentParentIDlist(int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
getCurrentParentIDlist(int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrix
 
getCurrentParentIDlist(int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
getCurrentParentIDlist(int, int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
getCurrentParents() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getCurrentParents() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetManagerI
 
getCurrentScore() - Method in class edu.duke.cs.banjo.learner.components.Decider
 
getCycleAtNode() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
getCycleAtNode() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
getCycleAtNode() - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
getDeleteableParents() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getDeleteableParents() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetManagerI
 
getDirectoryName() - Method in class edu.duke.cs.banjo.data.observations.PreprocessedObservationsWithFileInfo
 
getDiscretizedValue(int, String) - Method in class edu.duke.cs.banjo.data.observations.DataPreparerBasic
 
getDiscretizedValue(int, String) - Method in interface edu.duke.cs.banjo.data.observations.DataPreparerI
 
getDynamicProcessParameter(String) - Method in class edu.duke.cs.banjo.data.settings.Settings
Gets the value of the specified dynamic process parameter.
getDynamicProcessParameters() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getElapsedTime() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getEntry(int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
getEntry(int, int, int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrix
 
getEntry(int, int, int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesI
 
getErrorInfo() - Method in class edu.duke.cs.banjo.utility.BanjoError
 
getErrorMessageText() - Method in class edu.duke.cs.banjo.utility.BanjoError
 
getErrorMessages() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getErrorType() - Method in class edu.duke.cs.banjo.utility.BanjoError
 
getExceptionType() - Method in class edu.duke.cs.banjo.utility.BanjoException
 
getFileName() - Method in class edu.duke.cs.banjo.data.observations.PreprocessedObservationsWithFileInfo
 
getGeneralProcessDataStorage() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getHashCode() - Method in class edu.duke.cs.banjo.bayesnet.NodeScoreCacheItem
 
getHashCode(int, int[][]) - Method in class edu.duke.cs.banjo.bayesnet.NodeScoreCacheItem
 
getHashCode() - Method in interface edu.duke.cs.banjo.bayesnet.NodeScoreCacheItemI
 
getHashCode(int, int[][]) - Method in interface edu.duke.cs.banjo.bayesnet.NodeScoreCacheItemI
 
getHighScore() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getHighScoreStructure() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getHighScoreStructureSet() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getHighScoreStructureSet() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getInitialParents() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getInitialProcessParameterLowercase(String) - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getItemNameCanonical() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getItemNameDescriptive() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getItemNameForComparison() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getItemNameFormattedForDisplay() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getItemValueAsLoaded() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getItemValueValidated() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getJobSignature(Settings) - Static method in class edu.duke.cs.banjo.utility.StringUtil
Compiles the setting values that we group as the "job signature".
getMatrix() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
getMatrix() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrix
 
getMaxMarkovLag() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getMaxValueCount(int) - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
Get the maximum value that a specified variable can assume.
getMaxValueCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
Get the maximum value that any variable can assume.
getMaxValueCount(int) - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
Get the maximum value that a specified variable can assume.
getMaxValueCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
Get the maximum value that any variable can assume.
getMaxValueCount() - Method in class edu.duke.cs.banjo.learner.components.Evaluator.ObservationsSelector
 
getMaxValueCount(int) - Method in class edu.duke.cs.banjo.learner.components.Evaluator.ObservationsSelector
 
getMaxValueCount() - Method in class edu.duke.cs.banjo.learner.components.EvaluatorBDe.CompactObservationsSelector
 
getMaxValueCount(int) - Method in class edu.duke.cs.banjo.learner.components.EvaluatorBDe.CompactObservationsSelector
 
getMaxValueCount() - Method in class edu.duke.cs.banjo.learner.components.EvaluatorBDe.LegacyObservationsSelector
 
getMaxValueCount(int) - Method in class edu.duke.cs.banjo.learner.components.EvaluatorBDe.LegacyObservationsSelector
 
getMessage() - Method in class edu.duke.cs.banjo.utility.BanjoException
 
getMinMarkovLag() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getMustBeAbsentParents() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getMustBeAbsentParents() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetManagerI
 
getMustBePresentParents() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getMustBePresentParents() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetManagerI
 
getNBestMax() - Method in class edu.duke.cs.banjo.utility.NBestProcessor
 
getNetworkScore() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetStructure
 
getNetworkScore() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetStructureI
 
getNetworkStructure() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetStructure
 
getNetworkStructure() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetStructureI
 
getNetworksVisitedGlobalCounter() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getNodeID() - Method in class edu.duke.cs.banjo.bayesnet.NodeScoreCacheItem
 
getNodeID() - Method in interface edu.duke.cs.banjo.bayesnet.NodeScoreCacheItemI
 
getNodeScore() - Method in class edu.duke.cs.banjo.bayesnet.NodeScoreCacheItem
 
getNodeScore() - Method in interface edu.duke.cs.banjo.bayesnet.NodeScoreCacheItemI
 
getObjItemInfo() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getObjItemValue() - Method in class edu.duke.cs.banjo.data.settings.SettingItem
 
getObservationCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getObservationCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getObservationCount() - Method in class edu.duke.cs.banjo.data.observations.PreprocessedObservations
 
getObservationCount() - Method in class edu.duke.cs.banjo.learner.components.Evaluator.ObservationsSelector
 
getObservationCount() - Method in class edu.duke.cs.banjo.learner.components.EvaluatorBDe.CompactObservationsSelector
 
getObservationCount() - Method in class edu.duke.cs.banjo.learner.components.EvaluatorBDe.LegacyObservationsSelector
 
getObservationRowCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getObservationRowCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getObservationValue(int, int, int) - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getObservationValue(int, int, int) - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getObservationValue(int, int, int) - Method in interface edu.duke.cs.banjo.data.observations.ObservationsI
 
getObservations() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getObservationsArrayWithFileInfo() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getOptionalThreadInfo() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getParentCount(int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArray
 
getParentCount() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
getParentCount(int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsArrayWithCachedStatistics
 
getParentCount(int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrix
 
getParentCount() - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
getParentCount(int) - Method in class edu.duke.cs.banjo.bayesnet.EdgesAsMatrixWithCachedStatistics
 
getParentCount() - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
getParentCount(int) - Method in interface edu.duke.cs.banjo.bayesnet.EdgesWithCachedStatisticsI
 
getParentNodeID() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetChange
 
getParentNodeID() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetChangeI
 
getParentNodeLag() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetChange
 
getParentNodeLag() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetChangeI
 
getPreprocessedObservationsWithFileInfo() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getProcessedSettings() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getRandomSequence() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getRandomSequence() - Method in class edu.duke.cs.banjo.utility.BanjoRandomNumber
 
getReportFileNameMT(String, String, int) - Static method in class edu.duke.cs.banjo.utility.StringUtil
Generates the report file name for a given thread in the multi-threaded scenario.
getSearchLoopIndex() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetStructure
 
getSearchLoopIndex() - Method in interface edu.duke.cs.banjo.bayesnet.BayesNetStructureI
 
getSearcherStatistics() - Method in class edu.duke.cs.banjo.learner.Searcher
 
getSelectorChangeTypeCount() - Method in class edu.duke.cs.banjo.learner.components.Proposer.EdgeSelector
 
getSettingItemValueAsLoaded(String) - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getSettingItemValueAsValidated(String) - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getSettingName() - Method in class edu.duke.cs.banjo.utility.BanjoError
 
getSettings() - Method in class edu.duke.cs.banjo.application.BanjoThreadHandler
 
getStorageSize() - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getStrRawObservationDataPoints() - Method in class edu.duke.cs.banjo.data.observations.PreprocessedObservations
 
getTraceFileName(int) - Method in class edu.duke.cs.banjo.utility.FileUtil
 
getValidatedProcessParameter(String) - Method in class edu.duke.cs.banjo.data.settings.Settings
 
getValueCountList() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getValueCountList() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getVarCount() - Method in class edu.duke.cs.banjo.bayesnet.BayesNetManager
 
getVarCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getVarCount() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getVariableNames() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsArray
 
getVariableNames() - Method in class edu.duke.cs.banjo.data.observations.ObservationsAsMatrix
 
getVariableNames() - Method in interface edu.duke.cs.banjo.data.observations.ObservationsI
 
getVariableNames() - Method in class edu.duke.cs.banjo.data.observations.PreprocessedObservations
 
getXMLFooter() - Method in class edu.duke.cs.banjo.utility.NBestProcessor
 
getXMLHeader() - Method in class edu.duke.cs.banjo.utility.NBestProcessor
 

A B C D E F G H I J L M N O P R S T U V W X