Here are more links
Data Analysis
" The data and analysis results can be explored through
1. the Broad Institute FireBrowse portal (
http://firebrowse.org/?cohort=GBMLGG),
2. the cBioPortal for Cancer Genomics (
http://www.cbioportal.org/study.do?canc ... m_tcga_pub),
3. in a Tumor Map (
http://tumormap.ucsc.edu/?p=ynewton.gliomas-paper),
4. the TCGA transcript fusion portal (
http://www.tumorfusions.org),
5. TCGA Batch Effects (
http://bioinformatics.mdanderson.org/tcgambatch/),
6. Regulome Explorer (
http://explorer.cancerregulome.org/),
7. Next-Generation Clustered Heat Maps (
http://bioinformatics.mdanderson.org/TCGA/NGCHMPortal/).
8. See also Supplemental Information and the TCGA publication page (
https://tcga-data.nci.nih.gov/docs/publ ... ggbm_2015/).
that take you to glioblastoma and lower grade glioma data that was used in the following paper:
Cell. Author manuscript; available in PMC 2017 Jan 28.
Published in final edited form as:
Cell. 2016 Jan 28; 164(3): 550–563.
doi: 10.1016/j.cell.2015.12.028
PMCID: PMC4754110
NIHMSID: NIHMS746836
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
Michele Ceccarelli,1,2,23 Floris P. Barthel,3,4,23 Tathiane M. Malta,5,23 Thais S. Sabedot,5,23 Sofie R. Salama,6 Bradley A. Murray,7 Olena Morozova,6 Yulia Newton,6 Amie Radenbaugh,6 Stefano M. Pagnotta,2,8 Samreen Anjum,1 Jiguang Wang,9 Ganiraju Manyam,4 Pietro Zoppoli,9 Shiyung Ling,4 Arjun A. Rao,6 Mia Grifford,6 Andrew D. Cherniack,7 Hailei Zhang,7 Laila Poisson,10 Carlos Gilberto Carlotti, Junior,5 Daniela Pretti da Cunha Tirapelli,5 Arvind Rao,4 Tom Mikkelsen,10 Ching C. Lau,11,12 W.K. Alfred Yung,4 Raul Rabadan,9 Jason Huse,13 Daniel J. Brat,14 Norman L. Lehman,15 Jill S. Barnholtz-Sloan,16 Siyuan Zheng,3 Kenneth Hess,3 Ganesh Rao,3 Matthew Meyerson,7,17 Rameen Beroukhim,7,17,18 Lee Cooper,14 Rehan Akbani,3 Margaret Wrensch,19 David Haussler,6 Kenneth D. Aldape,20 Peter W. Laird,21 David H. Gutmann,22 TCGA Research Network, Houtan Noushmehr,5,24,* Antonio Iavarone,9,24,* and Roel G.W. Verhaak3,24,*