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GEO datasets

PostPosted: Wed Jan 20, 2016 8:44 pm
by cwyoo
Please goto http://www.ncbi.nlm.nih.gov/geo/ and download gene expression data for Glioblastoma and Lower Grade Brain Cancer in human. Post the original data, discritized data, and analysis results of banjo and ARACNE.

Re: GEO datasets

PostPosted: Tue Jan 24, 2017 11:50 am
by stefmoore
Attached is the original data for GSE37418.

Re: GEO datasets

PostPosted: Wed Jan 25, 2017 2:42 pm
by cwyoo
stefmoore wrote:Attached is the original data for GSE37418.


Thanks, Stefanie and Katherine, please refer to http://smlg.fiu.edu/phpbb/viewtopic.php?f=10&t=99 and refer to two files attached by lsand039 on Tue Jul 26, 2016 9:53 am and on Wed Jul 27, 2016 11:12 am. Please combine those two files into one and check for any new datasets from GEO. Also check http://www.cbioportal.org/data_sets.jsp for 12 Central Nervous System/Brain tumor datasets and add if the datasets that are not in GEO.

Please specify subjects ethnicity and race information from the linked published papers. Please upload your progress here.

Re: GEO datasets

PostPosted: Tue Apr 25, 2017 11:01 am
by ktchi001
Composite file