Use random number gerator, e.g.,
http://www.random.org/sequences/, generate random number sequences. For example, let say you got the following sequences (smallest 1 and largest 10):
2
5
3
8
10
...
For the first repeating measurements (assume there are three repetitions), you use the first random number 2, i.e., select the second measurement for that gene. For the second repeating measurements (assume there are two repetitions), you use the first random number 5, i.e., select the first measurement for that gene.
When do you think you can complete the dataset? Once completed, please contact Luis for Bayesian networks analysis with banjo.