Probabilistic Graphical Models, Fall 2016

Class Projects from courses such as Probabilistic Graphical Network, Biostatistics II, etc.

Re: Probabilistic Graphical Models, Fall 2016

Postby lsand039 » Tue Dec 06, 2016 12:31 pm

Here is my simplified structure:
Log (p)= -4790.529381
Confidence:
min 0.01113009
max 0.105499243

Validation results:
Test:
Alzheimer = 0.741325 (235/317)
Healthy = 0.705128 (110/156)
Diseased = 0.776398 (125/161)
ROC AUC: Healthy: 0.798216
ROC AUC: Alzheimer: 0.798236

Leave One Out:
Alzheimer = 0.697161 (221/317)
Healthy = 0.762821 (119/156)
Diseased= 0.63354 (102/161)
ROC AUC: Healthy: 0.742017
ROC AUC: Alzheimer: 0.742017

4-fold Cross Validation:
Alzheimer = 0.678233 (215/317)
Healthy= 0.775641 (121/156)
Diseased= 0.583851 (94/161)
ROC AUC: Healthy: 0.746835
ROC AUC: Alzheimer: 0.746715
Attachments
LMLS.png
Screen shot of simplified structure
LMLS.png (49.21 KiB) Viewed 4127 times
beneLMLS.xdsl
Gene file of simplified structure
(20 KiB) Downloaded 165 times
Last edited by lsand039 on Wed Dec 07, 2016 9:31 am, edited 1 time in total.
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Re: Probabilistic Graphical Models, Fall 2016

Postby lsand039 » Wed Dec 07, 2016 9:30 am

Here are the results from the best structure:
Log(p)= -4781.533175

Validation results:
Test:
Alzheimer = 0.741325 (235/317)
Healthy = 0.705128 (110/156)
Diseased = 0.776398 (125/161)
ROC AUC: Healthy: 0.798216
ROC AUC: Alzheimer: 0.798256

Leave One Out:
Alzheimer = 0.697161 (221/317)
Healthy = 0.762821 (119/156)
Diseased = 0.63354 (102/161)
ROC AUC: Healthy: 0.742017
ROC AUC: Alzheimer: 0.742017

4-fold Cross Validation:
Alzheimer =0.690852 (219/317)
Healthy= 0.782051 (122/156)
Diseased =0.602484 (97/161)
ROC AUC: Healthy: 0.732541
ROC AUC: Alzheimer: 0.732541
Attachments
beneParametersAdded.xdsl
Genie file of best structure
(21.77 KiB) Downloaded 196 times
GMLS.png
Screenshot of best structure
GMLS.png (49.62 KiB) Viewed 4126 times
lsand039
 
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Re: Probabilistic Graphical Models, Fall 2016

Postby igrif005 » Thu Dec 08, 2016 12:25 am

Good evening,

Please see my attached presentation for class tomorrow morning.

Isabel
Attachments
BN_Swipe Right_12072016.pptx
(5.1 MiB) Downloaded 213 times
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Re: Probabilistic Graphical Models, Fall 2016

Postby igrif005 » Thu Dec 08, 2016 1:42 am

Evening,

Please see my attached Final Paper. Looking forward to discussing our projects in class tomorrow.

Isabel
Attachments
Griffin_BN_Swiping Right for an STD.pdf
(437.99 KiB) Downloaded 176 times
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Re: Probabilistic Graphical Models, Fall 2016

Postby igrif005 » Thu Dec 08, 2016 10:35 am

GeNIe Model.
Attachments
Swiping Right_Attempt2_12022016.xdsl
(5.43 KiB) Downloaded 165 times
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Re: Probabilistic Graphical Models, Fall 2016

Postby igrif005 » Thu Dec 08, 2016 11:52 am

Updated HIV status node to reflect prevalence in Florida and sexual orientation node to reflection national distribution (at this point in time I haven't found any Florida-specific data).
Attachments
Swiping Right_Attempt3_12082016.xdsl
(4.99 KiB) Downloaded 187 times
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Re: Probabilistic Graphical Models, Fall 2016

Postby igrif005 » Fri Dec 09, 2016 9:27 pm

Hi Dr. Yoo,

Here is the final draft of my paper incorporating the changes from the other day.
Attachments
Griffin_BN_Swiping Right for an STD.pdf
(557.65 KiB) Downloaded 188 times
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Re: Probabilistic Graphical Models, Fall 2016

Postby cwyoo » Thu Dec 15, 2016 11:07 am

igrif005 wrote:Hi Dr. Yoo,

Here is the final draft of my paper incorporating the changes from the other day.


Good job. For publication, I will suggest you should describe more about Bayesian networks, , e.g., relationships in serial, merging, and diverging connections, etc.
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