by woodbench » Sun Mar 24, 2024 12:18 pm
3/24 Update - Natalie and I met with Samantha this past Thursday to go over our progress with the RNASeq workflow on our chosen datasets (thank you, Samantha!!). We were able to begin the merge process using the raw counts from two of our datasets, GSE239379 (16 patients) and GSE211554 (12 patients) to compose a meta data table to reference in the merged DESeq object, to filter low impression genes and estimate size factors. Natalie and I will be meeting again on Monday to focus on the merged data table formatting, to create separate columns for the ensemble ID and the gene name, since one of the datasets combines this data into one value. Then, we will be merging by ensemble ID.