SMLG (Statistical Machine Learning Group) Discussion Forum

The Dot to XDSL Module converting the dot file to an xdsl file and adding paramaters from the dataset using the SMILE EM module, has been tested and completed today.

Dr. Yoo,

I have tested the module with the DREAM2 Challenge 3 FjveGene_qPCR dataset and it worked properly.

Please find the corresponding files and results attached.

Dr. Yoo,

I just ran Hamza's dataset and I ran into the following error:

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terminate called after throwing an instance of 'bnl::io_error'
  what(): I/O Error:Unable to add node to network.
Aborted (core dumped)

I've changed the names and it did not improve. In addition, I went over the inputs (InputFile.dot and Dataset.txt) and they matched up so I'm uncertain why the code is not working.

I highlighted the error to Vincent and he said he would look into it.

Dr. Yoo,

The dot-to-xdsl module was tested with the DREAM2 Challenge 3 FiveGene_chip-3 dataset and it was successful.

Please see the corresponding files and results below.

Dr. Yoo,

The dot-to-xdsl module was tested on the DREAM2 Challenge 4 InSilico1-heterozygous-2 dataset and it was successful.

Please see the corresponding files and results below.

Dr. Yoo,

The dot-to-xdsl module was tested on the DREAM2 Challenge 4 InSilico1-null-mutants dataset and it was not successful. It gave me the following error.

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Cannot read the data file... existing.

This code was given to me even after I formatted the dataset in two different instances.

Something that I've noticed is that the code seems to be highly specific with the way it is formatted, i.e., the code does not accept tab or comma separated columns, just space separated files.

Please see the files below.