From total of 846 subjects (85 control / 761 BC), use 761 BC subjects, i.e., 485 Luminal A, 107 Luminal B, 32 HER2+ and 137 TNBC, and 30 genes (NRF1 plus 29 most correlated genes* with ethnicity {White, Asian, Hispanic, Black}) for each BC type, i.e., Luminal A, Luminal B, TNBC, and HER2. Run ordering for 72 hours on the following analyses (W=White, A=Asian, H=Hispanic, B=Black, O=Others; Others represents other than the specified ethnicity, e.g., W-O represents White (coded as 1) vs Others (A,H,B coded as 0))
* Note that these 29 genes might be different for each BC type
1. 485 Luminal A subjects with 30 genes and ethnicity coded as W-O
2. 485 Luminal A subjects with 30 genes and ethnicity coded as A-O
3. 485 Luminal A subjects with 30 genes and ethnicity coded as H-O
4. 485 Luminal A subjects with 30 genes and ethnicity coded as B-O
5. 107 Luminal B subjects with 30 genes and ethnicity coded as W-O
6. 107 Luminal B subjects with 30 genes and ethnicity coded as A-O
7. 107 Luminal B subjects with 30 genes and ethnicity coded as H-O
8. 107 Luminal B subjects with 30 genes and ethnicity coded as B-O
9. 137 TNBC subjects with 30 genes and ethnicity coded as W-O
10. 137 TNBC subjects with 30 genes and ethnicity coded as A-O
11. 137 TNBC subjects with 30 genes and ethnicity coded as H-O
12. 137 TNBC subjects with 30 genes and ethnicity coded as B-O
13. 32 HER2 subjects with 30 genes and ethnicity coded as W-O
14. 32 HER2 subjects with 30 genes and ethnicity coded as A-O
15. 32 HER2 subjects with 30 genes and ethnicity coded as H-O
16. 32 HER2 subjects with 30 genes and ethnicity coded as W-O
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
New Breast Cancer
7 posts
• Page 1 of 1
New Breast Cancer
by zgong001 » Thu Apr 25, 2019 3:52 pm
- zgong001
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Sub datasets
by zgong001 » Thu Apr 25, 2019 3:55 pm
The attachments are the sub datasets.
- Attachments
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Luminal B-A-O.txt- (6.72 KiB) Downloaded 117 times
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- Luminal B-B-O.txt
- (6.72 KiB) Downloaded 113 times
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- Luminal B-H-O.txt
- (6.72 KiB) Downloaded 113 times
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- Luminal B-W-O.txt
- (6.72 KiB) Downloaded 110 times
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- Luminal A-B-O.txt
- (29.62 KiB) Downloaded 104 times
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- Luminal A-H-O.txt
- (29.61 KiB) Downloaded 112 times
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- Luminal A-W-O.txt
- (29.61 KiB) Downloaded 99 times
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- Luminal A-A-O.txt
- (29.61 KiB) Downloaded 119 times
Last edited by zgong001 on Mon May 13, 2019 10:47 am, edited 1 time in total.
- zgong001
- Posts: 463
- Joined: Thu Nov 16, 2017 11:10 am
Sub datasets
by zgong001 » Thu Apr 25, 2019 3:57 pm
The attachments are the sub datasets.
- Attachments
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- TNBC-B-O.txt
- (8.54 KiB) Downloaded 116 times
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- TNBC-A-O.txt
- (8.54 KiB) Downloaded 104 times
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- TNBC-H-O.txt
- (8.54 KiB) Downloaded 103 times
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- TNBC-W-O.txt
- (8.54 KiB) Downloaded 112 times
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- HER2-B-O.txt
- (2.18 KiB) Downloaded 117 times
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- HER2-W-O.txt
- (2.18 KiB) Downloaded 104 times
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- HER2-A-O.txt
- (2.18 KiB) Downloaded 118 times
Last edited by zgong001 on Mon May 13, 2019 10:49 am, edited 1 time in total.
- zgong001
- Posts: 463
- Joined: Thu Nov 16, 2017 11:10 am
Result for HER2
by zgong001 » Mon Apr 29, 2019 1:13 pm
The attachments are the result for HER2.
- Attachments
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- Orders-HER2-W-O.xlsx
- (29.09 KiB) Downloaded 116 times
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- Result-HER2-W-O.txt
- (5.71 KiB) Downloaded 106 times
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- Orders-HER2-B-O.xlsx
- (33.11 KiB) Downloaded 115 times
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- Orders-HER2-A-O.xlsx
- (22.54 KiB) Downloaded 116 times
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- Result-HER2-B-O.txt
- (5.39 KiB) Downloaded 102 times
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- Result-HER2-A-O.txt
- (4.12 KiB) Downloaded 119 times
Last edited by zgong001 on Wed May 22, 2019 10:22 am, edited 5 times in total.
- zgong001
- Posts: 463
- Joined: Thu Nov 16, 2017 11:10 am
Result for Luminal A
by zgong001 » Mon Apr 29, 2019 1:14 pm
The attachments are the result for Luminal A.
- Attachments
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- Orders-Luminal A-W-O.xlsx
- (11.49 KiB) Downloaded 102 times
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- Orders-Luminal A-H-O.xlsx
- (11.06 KiB) Downloaded 109 times
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- Result-Luminal-A-W-O.txt
- (3.65 KiB) Downloaded 110 times
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- Result-Luminal A-H-O.txt
- (2.21 KiB) Downloaded 104 times
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- Orders-Luminal A-B-O.xlsx
- (14.04 KiB) Downloaded 125 times
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- Orders-Luminal A-A-O.xlsx
- (10.42 KiB) Downloaded 123 times
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- Result-Luminal A-B-O.txt
- (3.34 KiB) Downloaded 114 times
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- Result-Luminal A-A-O.txt
- (2.23 KiB) Downloaded 103 times
Last edited by zgong001 on Thu May 30, 2019 9:26 am, edited 5 times in total.
- zgong001
- Posts: 463
- Joined: Thu Nov 16, 2017 11:10 am
Result for Luminal B
by zgong001 » Mon Apr 29, 2019 1:20 pm
The attachments are the result for Luminal B.
- Attachments
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- Orders-Luminal B-W-O.xlsx
- (23.48 KiB) Downloaded 116 times
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- Orders - Luminal B-H-O.xlsx
- (39.41 KiB) Downloaded 116 times
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- Result-Luminal B-W-O.txt
- (5.88 KiB) Downloaded 109 times
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- Orders - Luminal B-A-O.xlsx
- (25.6 KiB) Downloaded 121 times
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- Orders-Luminal B-B-O.xlsx
- (17.72 KiB) Downloaded 110 times
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- Result - Luminal B-H-O.txt
- (8.44 KiB) Downloaded 108 times
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- Result - Luminal B-A-O.txt
- (6.5 KiB) Downloaded 93 times
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- Result-Luminal B-B-O.txt
- (4.13 KiB) Downloaded 98 times
Last edited by zgong001 on Thu May 30, 2019 11:41 am, edited 5 times in total.
- zgong001
- Posts: 463
- Joined: Thu Nov 16, 2017 11:10 am
Result for TNBC
by zgong001 » Mon May 13, 2019 11:34 am
The attachments are the result for Luminal TNBC.
- Attachments
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- Orders-TNBC-W-O.xlsx
- (10.97 KiB) Downloaded 107 times
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- Orders -TNBC-A-O.xlsx
- (23.96 KiB) Downloaded 96 times
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- Orders-TNBC-H-O.xlsx
- (34.83 KiB) Downloaded 81 times
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- Orders-TNBC-B-O.xlsx
- (19.62 KiB) Downloaded 63 times
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- Result-TNBC-W-O.txt
- (2.53 KiB) Downloaded 32 times
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- Result-TNBC-H-O-r.txt
- (8.74 KiB) Downloaded 30 times
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- Result-TNBC-B-O-r.txt
- (5.55 KiB) Downloaded 32 times
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- Result -TNBC-A-O.txt
- (6.5 KiB) Downloaded 34 times
- zgong001
- Posts: 463
- Joined: Thu Nov 16, 2017 11:10 am
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