SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
TCGA data for breast cancer
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TCGA data for breast cancer
by cwyoo » Sat Mar 14, 2015 3:00 pm
RNA expression datasets converted to excel files from TCGA data repository for publication "Comprehensive molecular portraits of human breast tumours" in Nature 2012 https://tcga-data.nci.nih.gov/docs/publications/brca_2012/
- Attachments
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BRCA.exp.348.med.xlsx- mRNA, miRNA, methylation, copy number, protein, and whole exome sequencing 348 primary tumors
- (53.3 MiB) Downloaded 142 times
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- BRCA.exp.466.med.xlsx
- mRNA, miRNA, methylation, copy number, and whole exome sequencing 463 primary tumors and 3 metastatic tumors
- (70.9 MiB) Downloaded 123 times
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- BRCA.exp.547.med.xlsx
- 522 primary tumors, 3 metastatic tumors, and 22 tumor-adjacent normal samples
- (81.38 MiB) Downloaded 121 times
- cwyoo
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Re: TCGA data for breast cancer
by sakethts » Fri Jul 08, 2016 4:42 pm
In order to download the whole dataset from the TCGA we found a website of Board GDAC to be helpful as we could gather most of the cases of TCGA using this site.
The process of downloading data is very straight forward: we have to navigate and select the Browse data option and then filter out the categories based upon your requirement.
Please do find the link for the GDAC Firehose : https://gdac.broadinstitute.org/
The process of downloading data is very straight forward: we have to navigate and select the Browse data option and then filter out the categories based upon your requirement.
Please do find the link for the GDAC Firehose : https://gdac.broadinstitute.org/
- sakethts
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- Joined: Thu Jun 16, 2016 4:26 pm
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