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Re: Bene

PostPosted: Thu Mar 05, 2015 11:23 am
by meninonas
Dr. Yoo,

Please find the results for the second dataset. It took approximately 12 hours to run.

Re: Bene Analysis

PostPosted: Mon Mar 09, 2015 2:33 pm
by meninonas
Dr. Yoo,

Please find the results for one of the Bene datasets below.

Re: Bene Analysis

PostPosted: Mon Mar 09, 2015 2:34 pm
by meninonas
Dr. Yoo,

Find the Bene results below.

Re: Bene Analysis

PostPosted: Mon Mar 09, 2015 7:49 pm
by cwyoo
meninonas wrote:Dr. Yoo,

Please find the results for one of the Bene datasets below.


In the analysis result for 4th Dataset.xlsx, I will say it is highly unlikely that some genes will have no parents and no children. In this analysis, FARSB has no parents and no children. This is most likely bene just crashed. Please run it again and if you get the same results, I will ask you to remove the genes that have no parents and no children from the current analysis and move them to the next dataset for a new analysis.

Re: Bene Analysis

PostPosted: Tue Mar 10, 2015 1:52 pm
by meninonas
Dr. Yoo,

Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.

Re: Bene Analysis

PostPosted: Tue Mar 10, 2015 4:25 pm
by cwyoo
meninonas wrote:Dr. Yoo,

Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.


Please just upload the png image with the dataset.

Re: Bene Analysis

PostPosted: Wed Mar 11, 2015 1:19 pm
by meninonas
Dr. Yoo,

I ran 3rd and 6th Dataset and the last gene of the dataset consistently remains without a father nor child.

Re: Bene Analysis

PostPosted: Wed Mar 11, 2015 1:33 pm
by meninonas
Dr. Yoo,

Please find the results for the 7th Dataset.

Re: Bene Analysis

PostPosted: Wed Mar 11, 2015 3:25 pm
by meninonas
Dr. Yoo,

I just got the results for the 8th Dataset.

Re: Bene Analysis

PostPosted: Wed Mar 11, 2015 4:11 pm
by meninonas
Dr. Yoo,

For some particular reason, whenever I run Bene in path-two and path-three there seems to be an issue. I've gone from 25 to 19 variables but the results keep on coming up with the last gene keeps on remaining with a parent nor a child. It doesn't give me an error either. Do you think it's a memory issue again?