Dr. Yoo,
Please find the results for the second dataset. It took approximately 12 hours to run.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
Bene Analysis
22 posts
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Re: Bene
by meninonas » Thu Mar 05, 2015 11:23 am
- Attachments
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2nd Dataset Bene Results.zip- (134.46 MiB) Downloaded 142 times
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- 2nd Dataset.csv
- (21.42 KiB) Downloaded 149 times
- meninonas
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Re: Bene Analysis
by meninonas » Mon Mar 09, 2015 2:33 pm
Dr. Yoo,
Please find the results for one of the Bene datasets below.
Please find the results for one of the Bene datasets below.
- Attachments
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- resdir.zip
- (2.66 MiB) Downloaded 142 times
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- 4th Dataset.xlsx
- (41.62 KiB) Downloaded 154 times
- meninonas
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Re: Bene Analysis
by meninonas » Mon Mar 09, 2015 2:34 pm
Dr. Yoo,
Find the Bene results below.
Find the Bene results below.
- Attachments
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- 5th Dataset.xlsx
- (42.85 KiB) Downloaded 138 times
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- resdir.zip
- (3.48 MiB) Downloaded 151 times
- meninonas
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Re: Bene Analysis
by cwyoo » Mon Mar 09, 2015 7:49 pm
meninonas wrote:Dr. Yoo,
Please find the results for one of the Bene datasets below.
In the analysis result for 4th Dataset.xlsx, I will say it is highly unlikely that some genes will have no parents and no children. In this analysis, FARSB has no parents and no children. This is most likely bene just crashed. Please run it again and if you get the same results, I will ask you to remove the genes that have no parents and no children from the current analysis and move them to the next dataset for a new analysis.
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Re: Bene Analysis
by meninonas » Tue Mar 10, 2015 1:52 pm
Dr. Yoo,
Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.
Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.
- Attachments
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- 7th Dataset.xlsx
- (41.81 KiB) Downloaded 141 times
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- resdir.zip
- (134.45 MiB) Downloaded 174 times
- meninonas
- Posts: 137
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Re: Bene Analysis
by cwyoo » Tue Mar 10, 2015 4:25 pm
meninonas wrote:Dr. Yoo,
Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.
Please just upload the png image with the dataset.
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Re: Bene Analysis
by meninonas » Wed Mar 11, 2015 1:19 pm
Dr. Yoo,
I ran 3rd and 6th Dataset and the last gene of the dataset consistently remains without a father nor child.
I ran 3rd and 6th Dataset and the last gene of the dataset consistently remains without a father nor child.
- Attachments
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- 6th Dataset Results.zip
- (1.62 MiB) Downloaded 138 times
Last edited by meninonas on Wed Mar 11, 2015 3:20 pm, edited 2 times in total.
- meninonas
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Re: Bene Analysis
by meninonas » Wed Mar 11, 2015 1:33 pm
Dr. Yoo,
Please find the results for the 7th Dataset.
Please find the results for the 7th Dataset.
- Attachments
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- 7th Dataset.xlsx
- (41.81 KiB) Downloaded 184 times
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- 7th Dataset Results.zip
- (3.04 MiB) Downloaded 152 times
- meninonas
- Posts: 137
- Joined: Tue Jun 24, 2014 3:25 pm
Re: Bene Analysis
by meninonas » Wed Mar 11, 2015 3:25 pm
Dr. Yoo,
I just got the results for the 8th Dataset.
I just got the results for the 8th Dataset.
- Attachments
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- 8th Dataset.zip
- (1.93 MiB) Downloaded 135 times
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- 8th Dataset.xlsx
- (37.09 KiB) Downloaded 151 times
- meninonas
- Posts: 137
- Joined: Tue Jun 24, 2014 3:25 pm
Re: Bene Analysis
by meninonas » Wed Mar 11, 2015 4:11 pm
Dr. Yoo,
For some particular reason, whenever I run Bene in path-two and path-three there seems to be an issue. I've gone from 25 to 19 variables but the results keep on coming up with the last gene keeps on remaining with a parent nor a child. It doesn't give me an error either. Do you think it's a memory issue again?
For some particular reason, whenever I run Bene in path-two and path-three there seems to be an issue. I've gone from 25 to 19 variables but the results keep on coming up with the last gene keeps on remaining with a parent nor a child. It doesn't give me an error either. Do you think it's a memory issue again?
- Attachments
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- 6th Dataset.zip
- (1.37 MiB) Downloaded 127 times
Last edited by meninonas on Mon Mar 16, 2015 4:33 pm, edited 1 time in total.
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