Files for GSE63669
Files removed GPL cleaning ERROR
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by DanielTira » Thu Apr 05, 2018 2:16 pm
- DanielTira
- Posts: 18
- Joined: Thu Feb 15, 2018 5:09 pm
Re: GEO Microarray Data Cleaning
by DanielTira » Mon Apr 09, 2018 5:13 pm
Files for GSE63669
- Attachments
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GSE63669aftexcel.txt- (24.5 MiB) Downloaded 772 times
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- GSE63669avg.txt
- (12.24 MiB) Downloaded 778 times
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- GSE63669zscore.txt
- (17.59 MiB) Downloaded 752 times
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- GSE63669dscrt.txt
- (4.34 MiB) Downloaded 793 times
- DanielTira
- Posts: 18
- Joined: Thu Feb 15, 2018 5:09 pm
Re: GEO Microarray Data Cleaning
by DanielTira » Tue Apr 10, 2018 4:19 pm
Files for Super Series 62960
GSE62866
GSE62866
- Attachments
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- GSE62866zscore.txt
- (9.3 MiB) Downloaded 780 times
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- GSE62866dscrt.txt
- (2.34 MiB) Downloaded 768 times
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- GSE62866avg.txt
- (8.65 MiB) Downloaded 754 times
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- GSE62866aftexcel.txt
- (10.78 MiB) Downloaded 789 times
Last edited by DanielTira on Tue Apr 10, 2018 4:23 pm, edited 1 time in total.
- DanielTira
- Posts: 18
- Joined: Thu Feb 15, 2018 5:09 pm
Re: GEO Microarray Data Cleaning
by DanielTira » Tue Apr 10, 2018 4:41 pm
Files for Super Series 62960
GSE62870
GSE62870
- Attachments
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- GSE62870aftexcel.txt
- (6.16 MiB) Downloaded 764 times
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- GSE62870avg.txt
- (5 MiB) Downloaded 772 times
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- GSE62870dscrt.txt
- (1.47 MiB) Downloaded 749 times
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- GSE62870zscore.txt
- (5.36 MiB) Downloaded 805 times
- DanielTira
- Posts: 18
- Joined: Thu Feb 15, 2018 5:09 pm
Re: GEO Microarray Data Cleaning
by stefmoore » Mon May 14, 2018 2:27 pm
Files for GSE81934
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- GSE81934avg.txt
- (27.09 MiB) Downloaded 745 times
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- GSE81934dscrt.txt
- (12.42 MiB) Downloaded 765 times
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- GSE81934zscore.txt
- (56.36 MiB) Downloaded 819 times
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- GSE81934aftexcel.txt
- (56.89 MiB) Downloaded 813 times
- stefmoore
- Posts: 6
- Joined: Mon Aug 08, 2016 2:11 pm
Updated Version of MicroArray Cleaning Code
by efrain.gonzalez0 » Mon Jun 25, 2018 5:38 pm
Good evening,
I have attached the most recent version of the cleaning code to this post.
Respectfully,
Efrain Gonzalez
I have attached the most recent version of the cleaning code to this post.
Respectfully,
Efrain Gonzalez
- Attachments
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- RCleanDscret.txt
- Cleaning Code
- (13.61 KiB) Downloaded 738 times
- efrain.gonzalez0
- Posts: 138
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Re: GEO Microarray Data Cleaning
by brianlee » Tue Jun 26, 2018 1:09 pm
Files for GSE73038
- Attachments
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- GSE73038aftexcel.txt
- (74.32 MiB) Downloaded 799 times
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- GSE73038zscore.txt
- (102.01 MiB) Downloaded 805 times
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- GSE73038dscrt.txt
- (22.61 MiB) Downloaded 774 times
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- GSE73038avg.txt
- (32.5 MiB) Downloaded 744 times
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 4:20 pm
Re: GEO Microarray Data Cleaning
by brianlee » Tue Jun 26, 2018 2:40 pm
Files for GSE6014
- Attachments
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- GSE6014aftexcel.txt
- (925.45 KiB) Downloaded 753 times
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- GSE6014avg.txt
- (508.68 KiB) Downloaded 761 times
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- GSE6014dscrt.txt
- (374.7 KiB) Downloaded 737 times
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- GSE6014zscore.txt
- (1.11 MiB) Downloaded 740 times
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 4:20 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jun 26, 2018 2:43 pm
Files for GSE7696 series
- GSE7696aftexcel.txt
- (6.58 MiB) Downloaded 759 times
- GSE7696avg.txt
- (4.52 MiB) Downloaded 770 times
- GSE7696dscrt.txt
- (2.05 MiB) Downloaded 755 times
- GSE7696zscore.txt
- (8.98 MiB) Downloaded 720 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by brianlee » Wed Jun 27, 2018 12:23 pm
When processing GSE42670 (GPL4091), RStudio crashes with fatal error. This occurs during step 4 of error checking (between "##Is there a clean version of the GPL file available" and "##Changing the gene ID to gene name." ).
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