GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 1653 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 1719 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 1685 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 1697 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 1728 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 1715 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 1683 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 1726 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 1754 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 1718 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 1691 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 1733 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 1720 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 1704 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 1724 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 1730 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 1762 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 1744 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 1696 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 1713 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 1718 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 1732 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 1735 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 1697 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 1675 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 1678 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 1648 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 1734 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 1685 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 1677 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 1716 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 1652 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 1646 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 1618 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 1662 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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