GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 513 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 515 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 522 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 525 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 537 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 523 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 529 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 535 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 532 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 513 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 527 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 524 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 537 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 517 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 530 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 526 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 530 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 537 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 516 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 537 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 538 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 524 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 531 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 531 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 531 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 539 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 502 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 516 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 499 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 520 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 508 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 418 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 444 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 428 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 444 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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