GEO Microarray Data Cleaning

GEO Brain Tumor Microarray and RNA-seq Data Cleaning

Re: GEO Microarray Data Cleaning

Postby sbainazeersheikh » Tue Jul 17, 2018 12:01 pm

GSE73199- GPL10123

After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
Attachments
GSE73199avg.txt
(1.47 MiB) Downloaded 410 times
GSE73199zscore.txt
(1.16 MiB) Downloaded 415 times
GSE73199aftexcel.txt
(48.26 MiB) Downloaded 418 times
sbainazeersheikh
 
Posts: 7
Joined: Sun Jun 24, 2018 5:27 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Wed Jul 18, 2018 3:50 pm

Files for GSE53228-GPL6480
Attachments
GSE532286480zscore.txt
(10.69 MiB) Downloaded 424 times
GSE532286480dscrt.txt
(2.67 MiB) Downloaded 433 times
GSE532286480avg.txt
(6.88 MiB) Downloaded 420 times
GSE532286480aftexcel.txt
(12.01 MiB) Downloaded 422 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Wed Jul 18, 2018 4:12 pm

Files for GSE49822
Attachments
GSE49822zscore.txt
(11.13 MiB) Downloaded 428 times
GSE49822dscrt.txt
(3.01 MiB) Downloaded 427 times
GSE49822avg.txt
(4.02 MiB) Downloaded 408 times
GSE49822aftexcel.txt
(8.42 MiB) Downloaded 425 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Wed Jul 18, 2018 5:18 pm

Files for GSE42670-GPL6244
Attachments
GSE426706244zscore.txt
(24.21 MiB) Downloaded 426 times
GSE426706244dscrt.txt
(5.63 MiB) Downloaded 433 times
GSE426706244avg.txt
(12.07 MiB) Downloaded 413 times
GSE426706244aftexcel.txt
(20.96 MiB) Downloaded 431 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Wed Jul 18, 2018 6:07 pm

Files for GSE36245
Attachments
GSE36245zscore.txt
(22.36 MiB) Downloaded 430 times
GSE36245dscrt.txt
(5.18 MiB) Downloaded 420 times
GSE36245avg.txt
(7.37 MiB) Downloaded 436 times
GSE36245aftexcel.txt
(16.04 MiB) Downloaded 423 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Wed Jul 18, 2018 6:31 pm

Files for GSE32374
Attachments
GSE32374zscore.txt
(11.97 MiB) Downloaded 435 times
GSE32374dscrt.txt
(2.96 MiB) Downloaded 430 times
GSE32374avg.txt
(8.28 MiB) Downloaded 423 times
GSE32374aftexcel.txt
(16.12 MiB) Downloaded 428 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Wed Jul 18, 2018 7:19 pm

Files for GSE25632
Attachments
GSE256326884zscore.txt
(14.45 MiB) Downloaded 436 times
GSE256326884dscrt.txt
(3.6 MiB) Downloaded 422 times
GSE256326884avg.txt
(7.88 MiB) Downloaded 422 times
GSE256326884aftexcel.txt
(13.09 MiB) Downloaded 403 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Tue Jul 31, 2018 11:59 am

The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Tue Jul 31, 2018 12:26 pm

Files for GSE13041-GPL570
Attachments
GSE13041570zscore.txt
(15.4 MiB) Downloaded 408 times
GSE13041570dscrt.txt
(3.72 MiB) Downloaded 402 times
GSE13041570avg.txt
(6.99 MiB) Downloaded 414 times
GSE13041570aftexcel.txt
(14.24 MiB) Downloaded 403 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

Re: GEO Microarray Data Cleaning

Postby JoshK » Tue Jul 31, 2018 12:33 pm

Files for GSE13041-GPL8300
Attachments
GSE130418300zscore.txt
(8.31 MiB) Downloaded 324 times
GSE130418300dscrt.txt
(1.98 MiB) Downloaded 339 times
GSE130418300avg.txt
(3.77 MiB) Downloaded 331 times
GSE130418300aftexcel.txt
(6.22 MiB) Downloaded 342 times
JoshK
 
Posts: 14
Joined: Thu May 10, 2018 5:22 pm

PreviousNext

Return to Dataset Cleaning

Who is online

Users browsing this forum: No registered users and 7 guests

cron