GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 857 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 852 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 859 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 865 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 876 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 866 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 864 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 872 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 874 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 850 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 874 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 869 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 874 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 853 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 876 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 873 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 867 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 880 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 867 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 874 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 871 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 863 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 875 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 877 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 867 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 865 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 852 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 852 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 852 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 859 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 843 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 774 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 774 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 776 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 788 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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