GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 437 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 431 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 442 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 446 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 464 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 450 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 442 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 452 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 454 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 434 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 447 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 447 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 464 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 432 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 451 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 452 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 448 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 451 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 447 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 456 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 456 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 447 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 450 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 458 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 450 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 447 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 429 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 431 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 424 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 439 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 429 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 347 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 366 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 353 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 367 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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