Zinc & Aging part II Genetic Data

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Raw Count Data with Gene Symbol

This contains the entire list of all the raw counts plus their gene symbol

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Data normalized for genes is d_scaleV2 ( using same referance criteria as before for logfold change)

Next sheet is discretize (same categories as before)

Additionally participant ID and Node Fasting included

last sheet FOR_BNLEARN used for BNLEARN

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Logs+ gene count sheet contains signficant genes

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See attached document with all the runs for BDE score. Let me know what you think. I redid them in order as it looks in the script that was posted.

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Markov Blanket Plot

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CPT Results Raw uploaded
I highlighted the most interesting results in relation to fasting

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I am going to run so more probabilities this weekend. Here are the probabilites related to the children.

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Gene Ontology from Reactome.

Two of the mainpathways relate to zinc so that is good news!

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Other interesting MB probs.

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File contains both marginal and conditional probs. based on high and low gene expression. It also contains the difference between the marginal and conditional prob for comparison.