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Re: Zinc & Aging part II Genetic Data
Posted:
Sat Apr 22, 2023 12:01 pmby rpazo001
Raw Count Data with Gene Symbol
This contains the entire list of all the raw counts plus their gene symbol
Re: Zinc & Aging part II Genetic Data
Posted:
Sat Apr 22, 2023 2:41 pmby rpazo001
Data normalized for genes is d_scaleV2 ( using same referance criteria as before for logfold change)
Next sheet is discretize (same categories as before)
Additionally participant ID and Node Fasting included
last sheet FOR_BNLEARN used for BNLEARN
Re: Zinc & Aging part II Genetic Data
Posted:
Sat Apr 22, 2023 2:45 pmby rpazo001
Logs+ gene count sheet contains signficant genes
Re: Zinc & Aging part II Genetic Data
Posted:
Tue May 02, 2023 7:33 pmby rpazo001
See attached document with all the runs for BDE score. Let me know what you think. I redid them in order as it looks in the script that was posted.
Re: Zinc & Aging part II Genetic Data
Posted:
Sun May 07, 2023 3:54 pmby rpazo001
Markov Blanket Plot
Re: Zinc & Aging part II Genetic Data
Posted:
Sun May 07, 2023 3:55 pmby rpazo001
CPT Results Raw uploaded
I highlighted the most interesting results in relation to fasting
Re: Zinc & Aging part II Genetic Data
Posted:
Fri May 12, 2023 11:53 amby rpazo001
I am going to run so more probabilities this weekend. Here are the probabilites related to the children.
Re: Zinc & Aging part II Genetic Data
Posted:
Fri May 12, 2023 11:54 amby rpazo001
Gene Ontology from Reactome.
Two of the mainpathways relate to zinc so that is good news!
Re: Zinc & Aging part II Genetic Data
Posted:
Mon May 15, 2023 12:14 pmby rpazo001
Other interesting MB probs.
Re: Zinc & Aging part II Genetic Data
Posted:
Thu May 18, 2023 3:50 pmby rpazo001
File contains both marginal and conditional probs. based on high and low gene expression. It also contains the difference between the marginal and conditional prob for comparison.