GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 926 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 939 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 930 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 938 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 948 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 939 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 940 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 938 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 944 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 924 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 941 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 947 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 953 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 923 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 947 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 943 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 927 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 950 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 937 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 952 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 951 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 938 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 949 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 953 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 934 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 935 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 919 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 924 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 924 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 928 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 919 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 845 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 853 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 849 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 860 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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