GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 850 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 843 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 844 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 856 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 867 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 855 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 851 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 858 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 860 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 837 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 864 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 858 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 864 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 844 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 865 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 856 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 856 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 870 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 856 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 868 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 861 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 856 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 867 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
- Attachments
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 861 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 858 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 856 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 837 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 837 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 838 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 850 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 830 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 761 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 764 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 771 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 780 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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