GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 555 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 552 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 561 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 557 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 573 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 566 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 582 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 575 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 578 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 546 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 558 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 573 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 583 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 567 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 571 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 566 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 563 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 577 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 572 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 577 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 572 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 576 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 571 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 576 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 562 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 573 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 548 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 556 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 548 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 560 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 558 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 466 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 491 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 478 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 475 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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