GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 627 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 626 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 641 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 640 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 652 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 630 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 659 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 642 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 648 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 633 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 630 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 651 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 654 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 635 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 638 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 631 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 649 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 657 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 643 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 654 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 650 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 642 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 646 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 651 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 624 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 646 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 625 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 631 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 624 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 639 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 626 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 545 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 557 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 558 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 551 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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