GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 1977 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 2048 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 2007 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 2043 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 2085 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 2060 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 2024 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 2055 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 2085 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 2082 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 2043 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 2061 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 2059 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 2041 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 2052 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 2070 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 2121 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 2106 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 2067 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 2064 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 2064 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 2105 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 2133 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
- Attachments
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 2035 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 2058 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 2010 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 2000 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 2078 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 2056 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 2024 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 2050 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 1979 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 1999 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 1970 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 2009 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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