GSE73199- GPL10123
After 10 hours of running the code, it arrived at an error. I've tried cleaning this file multiple times and all the other times, it didn't stop running, even if I left it to run overnight.
Below in the results the dscrt file is missing, but I assume it's because there is an error.
SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 12:01 pm
- Attachments
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GSE73199avg.txt- (1.47 MiB) Downloaded 442 times
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- GSE73199zscore.txt
- (1.16 MiB) Downloaded 436 times
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- GSE73199aftexcel.txt
- (48.26 MiB) Downloaded 448 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 5:27 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 3:50 pm
Files for GSE53228-GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 452 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 469 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 453 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 447 times
Last edited by JoshK on Wed Jul 18, 2018 4:38 pm, edited 1 time in total.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 4:12 pm
Files for GSE49822
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- GSE49822zscore.txt
- (11.13 MiB) Downloaded 457 times
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- GSE49822dscrt.txt
- (3.01 MiB) Downloaded 460 times
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- GSE49822avg.txt
- (4.02 MiB) Downloaded 442 times
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- GSE49822aftexcel.txt
- (8.42 MiB) Downloaded 455 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 5:18 pm
Files for GSE42670-GPL6244
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 454 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 469 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 441 times
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 457 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:07 pm
Files for GSE36245
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- GSE36245zscore.txt
- (22.36 MiB) Downloaded 459 times
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- GSE36245dscrt.txt
- (5.18 MiB) Downloaded 452 times
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- GSE36245avg.txt
- (7.37 MiB) Downloaded 457 times
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- GSE36245aftexcel.txt
- (16.04 MiB) Downloaded 454 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 6:31 pm
Files for GSE32374
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 462 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 458 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 453 times
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 461 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Wed Jul 18, 2018 7:19 pm
Files for GSE25632
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- GSE256326884zscore.txt
- (14.45 MiB) Downloaded 468 times
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- GSE256326884dscrt.txt
- (3.6 MiB) Downloaded 458 times
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- GSE256326884avg.txt
- (7.88 MiB) Downloaded 455 times
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- GSE256326884aftexcel.txt
- (13.09 MiB) Downloaded 434 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 11:59 am
The GSE24558-GPL8736 File took multiple days to finish running and did not yield any files. Additionally, there were no visible error messages in the code.
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:26 pm
Files for GSE13041-GPL570
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- GSE13041570zscore.txt
- (15.4 MiB) Downloaded 437 times
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- GSE13041570dscrt.txt
- (3.72 MiB) Downloaded 430 times
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- GSE13041570avg.txt
- (6.99 MiB) Downloaded 445 times
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- GSE13041570aftexcel.txt
- (14.24 MiB) Downloaded 435 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
Re: GEO Microarray Data Cleaning
by JoshK » Tue Jul 31, 2018 12:33 pm
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 354 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 374 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 358 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 372 times
- JoshK
- Posts: 14
- Joined: Thu May 10, 2018 5:22 pm
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