NRF1 and NRF1 target genes and aggressive Breast Cancer

Result for Add-Luminal A-White -2

Postby zgong001 » Mon Apr 22, 2019 10:46 am

The attachment is result of Add-Luminal A-White with 42 variables.
Attachments
Order-Add-Luminal A-White - 2.xlsx
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Result-Add-Luminal A-White - 2.txt
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zgong001
 
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Re: NRF1 and NRF1 target genes and aggressive Breast Cancer

Postby jramo033 » Tue Jul 09, 2019 11:55 pm

I m attaching the clinical info including the survival data
Attachments
Copy of TCGA RNA only sheet1 seqrev2 cleanedwith clinical variables .xlsx
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Re: NRF1 and NRF1 target genes and aggressive Breast Cancer

Postby zgong001 » Tue Jul 16, 2019 10:57 am

jramo033 wrote:I m attaching the clinical info including the survival data


Hi Jairo,

Could you help me find the survival data in the attachment? I can not find it. Is it days_to_death or days_to_last_followup or others?

And there is no patient ID in the DifethnBCsubtandnorm.xlsx file which you sent us and include gene expression and disease information (Luminal A, Luminal B, HER2, TNBC). How can we match the patient information to the gene sheets?


Thank you!
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Consensus Structures

Postby zgong001 » Tue Aug 06, 2019 9:55 am

The attachments are the consensus structures for Order-Weighted and Order-Not-Weighted structures in the following analyses results:


1. TNBC White vs Black


2. TNBC White vs Hispanic


3. TNBC Black vs Asian
Attachments
Stru-A2-TNBC-A-B-with Orders.zip
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Stru-WithoutOrder-A2-TNBC-A-B.zip
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Stru-A2-TNBC-B-W-with Orders.zip
(293.97 KiB) Downloaded 147 times
Stru-WithoutOrder-A2-TNBC-B-W.zip
(293.92 KiB) Downloaded 170 times
Stru-A2-TNBC-H-W-with Orders.zip
(301.87 KiB) Downloaded 160 times
Stru-WithoutOrder-A2-TNBC-H-W.zip
(298.99 KiB) Downloaded 167 times
Last edited by zgong001 on Tue Aug 06, 2019 2:01 pm, edited 2 times in total.
zgong001
 
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Consensus Structures

Postby zgong001 » Tue Aug 06, 2019 1:59 pm

The attachments are the consensus structures for Order-Weighted and Order-Not-Weighted structures in the following analyses results:

1. Luminal A White vs Black

2. Luminal A White vs Asian

3. Luminal A White vs Hispanic

4. Luminal A Black vs Asian

5. Luminal A Black vs Hispanic
Attachments
Stru-with Orders-A3-Luminal A-A-B.zip
(317.55 KiB) Downloaded 153 times
Stru-with Orders-A3-Luminal A-A-W.zip
(295.49 KiB) Downloaded 169 times
Stru-with Orders-A3-Luminal A-B-W.zip
(299.9 KiB) Downloaded 171 times
Stru-with Orders-A3-Luminal A-H-B.zip
(312.23 KiB) Downloaded 177 times
Stru-with Orders-A3-Luminal A-H-W.zip
(304.85 KiB) Downloaded 172 times
Stru-withoutOrders-A3-Luminal A-A-B.zip
(317.31 KiB) Downloaded 174 times
Stru-withoutOrders-A3-Luminal A-A-W.zip
(295.55 KiB) Downloaded 153 times
Stru-withoutOrders-A3-Luminal A-B-W.zip
(300.32 KiB) Downloaded 163 times
Stru-withoutOrders-A3-Luminal A-H-B.zip
(313.12 KiB) Downloaded 172 times
Stru-withoutOrders-A3-Luminal A-H-W.zip
(303.67 KiB) Downloaded 163 times
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correlation of genes with survival information

Postby zgong001 » Wed Sep 04, 2019 4:08 pm

The attachment is the correlation of genes with survival information.
Attachments
correlation.xlsx
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Re: NRF1 and NRF1 target genes and aggressive Breast Cancer

Postby zgong001 » Thu Sep 05, 2019 4:03 pm

This is the updated correlation. It was added the correlation of first 2 genes and last 2 genes with the survival information.
Attachments
correlation.xlsx
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Re: NRF1 and NRF1 target genes and aggressive Breast Cancer

Postby zgong001 » Fri Sep 06, 2019 9:27 am

This updated one added correlation coefficient.
Attachments
correlation.xlsx
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correlation of genes with survival information

Postby zgong001 » Tue Sep 10, 2019 1:39 pm

This updated one added 3 variables correlation and 4 variables correlation.
Attachments
correlation.xlsx
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Re: NRF1 and NRF1 target genes and aggressive Breast Cancer

Postby zgong001 » Thu Sep 12, 2019 10:11 am

The attachment is the updated survival analysis using correlation coefficient.
Attachments
correlation-updated.xlsx
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