myGraph.py
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import os
import re
class Graph:
"""
docstring for graph
"""
def __init__(self):
"""
use 0,1, 2, 3 as vertices
and label the vertices using their variable name
"""
self.vertices = []
self.edges = {} #from key to value (parent -> child)
self.parents = {} #the parents of the key, no label
self.edge_labelling = {}
self.vertice_labelling = {}
def add_edge(self, start, end, label = None):
if isinstance(start, int):
start = [start]
end = [end]
label = [label] if label else None
if label == None:
for s, e in zip(start, end):
self.edges[s].append(e)
self.parents[e].append(s)
else:
for s, e, l in zip(start, end, label):
self.edges[s].append(e)
self.parents[e].append(s)
self.edge_labelling[(s, e)] = l
def add_vertice(self, vertice, label = None):
if isinstance(vertice, int):
vertice = [vertice]
label = [label] if label else None
if label == None:
for v in vertice:
self.vertices.append(v)
self.edges[v] = []
self.parents[v] = []
else:
for v, l in zip(vertice, label):
self.vertices.append(v)
self.vertice_labelling[v] = l
self.edges[v] = []
self.parents[v] = []
def dot_to_graph(self, dot, d = None):
"""
txt is a dot txt file names, it is a string and
the location of txt is define in d, and the
default location is current working directory
"""
#load the dot data
if not d:
d = os.getcwd()
f = '/'.join([d, dot])
vertices = [line.rstrip('\n') for line in open(f) if '[label=' in line]
edges = [line.rstrip('\n') for line in open(f) if '->' in line]
#add vertices
for l in vertices:
l = l.replace(' ','')
pattern = '([0-9]+)\[label="(.+)"\];'
label = re.sub(pattern, '\\2',l)
v = int(re.sub(pattern, '\\1', l))
self.add_vertice(v, label)
#add edges
for l in edges:
l = l.replace(' ', '')
pattern = '([0-9]+)->([0-9]+);'
s = int(re.sub(pattern, '\\1', l))
e = int(re.sub(pattern, '\\2', l))
self.add_edge(s, e)
def graph_to_dot(self, name, label = None, labeljust = None, d = None):
"""
save a corresponding dot txt file in the
specific directory (define in d, and the
default location is current working directory)
the dot txt file name is given by name, it
is a string
"""
if not d:
d = os.getcwd()
f = d + '/' + name + '.txt'
tmp = open(f, 'w')
tmp.write('digraph abstract {\n')
#write label
if not label:
tmp.write('label = "'+label+'";\n')
#Write labeljust
if not labeljust:
tmp.write('labeljust = "'+
labeljust+'";\n')
#write vertices
for v, l in zip(self.vertices, self.vertice_labelling):
tmp.write('\t' + v
+ ' [label="' + l + '"];\n')
tmp.wirte('\n')
#write edges
all_edge = [(s, e) for e, v in self.parents for s in v]
for s, e in all_edge:
tmp.write('\t' + s + '->' + e + ';\n')
tmp.write('\n')
tmp.write('}\n')
tmp.close()
def delete_verrtice(self, vertice):
pass
def delete_edge(self, start, end):
pass
def ford_bellman(self, s):
"""
input s is a vertice
output is a dict
Bellman Ford algorithm to calculate the shortest distance
"""
D = {}
inf = len(self.vertices)
for x in self.vertices:
if x in self.edges[s]:
D[x] = 1
else:
D[x] = inf
D[s] = 0
for i in xrange(len(self.vertices) - 2):
for v in self.vertices:
if v != s:
for u in self.vertices:
if v in self.edges[u]:
D[v] = min(D[v], D[u] + 1)
return D
def avg_dist(self):
s = 0
for v in self.vertices:
s += sum(self.ford_bellman(v).values())
return s * 1.0 / (len(self.vertices) ** 2 - len(self.vertices))
def make_undirected(self):
for v in self.vertices:
for w in self.vertices:
if (w in self.edges[v]) and (not v in self.edges[w]):
self.edges[w].append(v)
def fromParents(self, verts, pars):
"""
add edges whose parents have been given
"""
self.vertices = []
for v in verts:
self.add_vertice(v)
self.edges[v] = []
for v, par in zip(verts, pars):
for p in par:
self.add_edge(p, v)
def num_edges(self):
return sum(map(len, self.edges.values()))