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Added the specification of executing entropySorted.R code.
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README.md
1 | 1. To execute the R code of CondIndependentTest.R, you need do some preparation. | 1 | 1. To execute the R code of CondIndependentTest.R, you need do some preparation. |
2 | a.) Install package "bnlearn" in R, (because I used "bnlearn" package in my code.): | 2 | a.) Install package "bnlearn" in R, (because I used "bnlearn" package in my code.): |
3 | install.packages("http://www.bnlearn.com/releases/bnlearn_latest.tar.gz") | 3 | install.packages("http://www.bnlearn.com/releases/bnlearn_latest.tar.gz") |
4 | b.) Download file CondIndependentTest.R and put it in a folder (For example, put it in folder "/home/zgong001/Documents/SprinklerDataset/CondIndependentTest.R"). | 4 | b.) Download file CondIndependentTest.R and put it in a folder (For example, put it in folder "/home/zgong001/Documents/SprinklerDataset/CondIndependentTest.R"). |
5 | 2. Execute the code. | 5 | 2. Execute the CondIndependentTest.R code. |
6 | a.)In Console of R, you type in: | 6 | a.)In Console of R, you type in: |
7 | source("/home/zgong001/Documents/SprinklerDataset/Rcode/CondIndependentTest.R") | 7 | source("/home/zgong001/Documents/SprinklerDataset/Rcode/CondIndependentTest.R") |
8 | The content in "" is the location where you put file CondIndependentTest.R. | 8 | The content in "" is the location where you put file CondIndependentTest.R. |
9 | If there are some errors, you should double check the path is correct. | 9 | If there are some errors, you should double check the path is correct. |
10 | b.)In Console of R, you type in something like the following: | 10 | b.)In Console of R, you type in something like the following: |
11 | CondIndTwoVar(filename = "/home/zgong001/Documents/SprinklerDataset/sprinkler1001.txt", methodu="x2", exfilename = "/home/zgong001/Documents/SprinklerDataset/pvalueSorted(sprinkler).xlsx") | 11 | CondIndTwoVar(filename = "/home/zgong001/Documents/SprinklerDataset/sprinkler1001.txt", methodu="x2", exfilename = "/home/zgong001/Documents/SprinklerDataset/pvalueSorted(sprinkler).xlsx") |
12 | filename: is the full path and file name of your data file. | 12 | filename: is the full path and file name of your data file. |
13 | methoudu: is the method you'll choose to do conditional independence test. You could choose "x2" or "mi". "x2" means Chi-Square Test of Independence and "mi" means mutual information test. | 13 | methoudu: is the method you'll choose to do conditional independence test. You could choose "x2" or "mi". "x2" means Chi-Square Test of Independence and "mi" means mutual information test. |
14 | exfilename: is the full path and excel file name which you want to output your test result. | 14 | exfilename: is the full path and excel file name which you want to output your test result. |
15 | 15 | ||
16 | |||
17 | 3. Execute the entropySorted.R code. | ||
18 | a.)In Console of R, you type in: | ||
19 | source("/home/zgong001/Documents/SprinklerDataset/Rcode/entropySorted.R") | ||
20 | The content in "" is the location where you put file entropySorted.R. | ||
21 | If there are some errors, you should double check the path is correct. | ||
22 | b.)In Console of R, you type in something like the following: | ||
23 | EntropySorted(filename = "/home/zgong001/Documents/SprinklerDataset/sprinkler1001.txt", exfilename = "/home/zgong001/Documents/SprinklerDataset/pvalueSorted(sprinkler).xlsx") | ||
24 | filename: is the full path and file name of your data file. | ||
25 | exfilename: is the full path and excel file name which you want to output your test result. | ||
26 | |||
16 | Note: The the data in data file could not be integer, for example 0, 1. It should be string, like s0, s1, or good, bad or state0 or state1. | 27 | Note: The the data in data file could not be integer, for example 0, 1. It should be string, like s0, s1, or good, bad or state0 or state1. |