Hi Samantha.
Could you include these ER stress genes in the last network? Thank you for your help
Atf3
Derl3
Sdf2l1
Mcm10
Trib3
IRE1
ATF6
PERK
ATF4
XBP1
jliuzzi wrote:Hi Samantha.
Could you include these ER stress genes in the last network? Thank you for your help
Atf3
Derl3
Sdf2l1
Mcm10
Trib3
IRE1
ATF6
PERK
ATF4
XBP1
samanthagonzales wrote:jliuzzi wrote:Hi Samantha.
Could you include these ER stress genes in the last network? Thank you for your help
Atf3
Derl3
Sdf2l1
Mcm10
Trib3
IRE1
ATF6
PERK
ATF4
XBP1
Here is the first draft of the requested network! Note that 4 of the genes are disconnected from the network because they do not have any neighbors in common with the second degree Markov blanket.
A note on how the networks are generated:
Network generation:
To generate the network, I create a node list by
1. Finding the nodes in the markov blanket of "pizMutation"
2. Finding the nodes in the markov blanket of all nodes in the first degree MB,
3. Manually adding any requested genes not inherently present in the second degree MB to the node list.
I then use the node list to generate a subgraph from the original network.
Let me know if you have any questions/suggestions!
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