Bene Analysis

A Simple Approach for Finding the Globally Optimal Bayesian Network Structure

Re: Bene

Postby meninonas » Thu Mar 05, 2015 11:23 am

Dr. Yoo,

Please find the results for the second dataset. It took approximately 12 hours to run.
Attachments
2nd Dataset Bene Results.zip
(134.46 MiB) Downloaded 158 times
2nd Dataset.csv
(21.42 KiB) Downloaded 165 times
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Re: Bene Analysis

Postby meninonas » Mon Mar 09, 2015 2:33 pm

Dr. Yoo,

Please find the results for one of the Bene datasets below.
Attachments
resdir.zip
(2.66 MiB) Downloaded 158 times
4th Dataset.xlsx
(41.62 KiB) Downloaded 171 times
meninonas
 
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Re: Bene Analysis

Postby meninonas » Mon Mar 09, 2015 2:34 pm

Dr. Yoo,

Find the Bene results below.
Attachments
5th Dataset.xlsx
(42.85 KiB) Downloaded 154 times
resdir.zip
(3.48 MiB) Downloaded 167 times
meninonas
 
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Re: Bene Analysis

Postby cwyoo » Mon Mar 09, 2015 7:49 pm

meninonas wrote:Dr. Yoo,

Please find the results for one of the Bene datasets below.


In the analysis result for 4th Dataset.xlsx, I will say it is highly unlikely that some genes will have no parents and no children. In this analysis, FARSB has no parents and no children. This is most likely bene just crashed. Please run it again and if you get the same results, I will ask you to remove the genes that have no parents and no children from the current analysis and move them to the next dataset for a new analysis.
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Re: Bene Analysis

Postby meninonas » Tue Mar 10, 2015 1:52 pm

Dr. Yoo,

Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.
Attachments
7th Dataset.xlsx
(41.81 KiB) Downloaded 157 times
resdir.zip
(134.45 MiB) Downloaded 189 times
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Re: Bene Analysis

Postby cwyoo » Tue Mar 10, 2015 4:25 pm

meninonas wrote:Dr. Yoo,

Please find the results for the 7th Dataset below. I will start running the 4th Dataset now.


Please just upload the png image with the dataset.
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Re: Bene Analysis

Postby meninonas » Wed Mar 11, 2015 1:19 pm

Dr. Yoo,

I ran 3rd and 6th Dataset and the last gene of the dataset consistently remains without a father nor child.
Attachments
6th Dataset Results.zip
(1.62 MiB) Downloaded 154 times
Last edited by meninonas on Wed Mar 11, 2015 3:20 pm, edited 2 times in total.
meninonas
 
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Re: Bene Analysis

Postby meninonas » Wed Mar 11, 2015 1:33 pm

Dr. Yoo,

Please find the results for the 7th Dataset.
Attachments
7th Dataset.xlsx
(41.81 KiB) Downloaded 200 times
7th Dataset Results.zip
(3.04 MiB) Downloaded 168 times
meninonas
 
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Re: Bene Analysis

Postby meninonas » Wed Mar 11, 2015 3:25 pm

Dr. Yoo,

I just got the results for the 8th Dataset.
Attachments
8th Dataset.zip
(1.93 MiB) Downloaded 150 times
8th Dataset.xlsx
(37.09 KiB) Downloaded 167 times
meninonas
 
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Re: Bene Analysis

Postby meninonas » Wed Mar 11, 2015 4:11 pm

Dr. Yoo,

For some particular reason, whenever I run Bene in path-two and path-three there seems to be an issue. I've gone from 25 to 19 variables but the results keep on coming up with the last gene keeps on remaining with a parent nor a child. It doesn't give me an error either. Do you think it's a memory issue again?
Attachments
6th Dataset.zip
(1.37 MiB) Downloaded 143 times
Last edited by meninonas on Mon Mar 16, 2015 4:33 pm, edited 1 time in total.
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