GEO Microarray Data Cleaning

GEO Brain Tumor Microarray and RNA-seq Data Cleaning

Re: GEO Microarray Data Cleaning

Postby brianlee » Fri Jul 06, 2018 5:54 pm

Files for GSE13041 - GPL96
Attachments
GSE13041-96zscore.txt
(47.98 MiB) Downloaded 151 times
GSE13041-96dscrt.txt
(10.85 MiB) Downloaded 158 times
GSE13041-96avg.txt
(32.51 MiB) Downloaded 155 times
GSE13041-96aftexcel.txt
(60.34 MiB) Downloaded 158 times
brianlee
 
Posts: 15
Joined: Fri Jun 22, 2018 3:20 pm

Re: GEO Microarray Data Cleaning

Postby brianlee » Fri Jul 06, 2018 7:49 pm

Files for GSE10878 - GPL2879
Attachments
GSE10878-2879zscore.txt
(16.73 MiB) Downloaded 160 times
GSE10878-2879dscrt.txt
(3.9 MiB) Downloaded 150 times
GSE10878-2879avg.txt
(17.29 MiB) Downloaded 164 times
GSE10878-2879aftexcel.txt
(28.68 MiB) Downloaded 155 times
brianlee
 
Posts: 15
Joined: Fri Jun 22, 2018 3:20 pm

Re: GEO Microarray Data Cleaning

Postby brianlee » Fri Jul 06, 2018 9:31 pm

Files for GSE36426
Attachments
GSE36426avg.txt
(8.31 MiB) Downloaded 162 times
GSE36426zscore.txt
(22.73 MiB) Downloaded 156 times
GSE36426dscrt.txt
(5.31 MiB) Downloaded 160 times
GSE36426aftexcel.txt
(14.27 MiB) Downloaded 150 times
brianlee
 
Posts: 15
Joined: Fri Jun 22, 2018 3:20 pm

Re: GEO Microarray Data Cleaning

Postby brianlee » Fri Jul 06, 2018 9:40 pm

Files for GSE56752 - GPL15366
Attachments
GSE56752-15366zscore.txt
(4.87 KiB) Downloaded 151 times
GSE56752-15366dscrt.txt
(3.93 KiB) Downloaded 154 times
GSE56752-15366avg.txt
(2.31 KiB) Downloaded 179 times
GSE56752-15366aftexcel.txt
(4.55 KiB) Downloaded 149 times
brianlee
 
Posts: 15
Joined: Fri Jun 22, 2018 3:20 pm

Re: GEO Microarray Data Cleaning

Postby brianlee » Mon Jul 09, 2018 2:44 pm

When attempting to clean GSE9885 - GPL887, the program generates a clean GPL file, but is followed by error messages. This occurs from step 5 and onward.
brianlee
 
Posts: 15
Joined: Fri Jun 22, 2018 3:20 pm

Re: GEO Microarray Data Cleaning

Postby sbainazeersheikh » Mon Jul 16, 2018 2:02 pm

Files for GSE53228- GPL6480
Attachments
GSE532286480zscore.txt
(10.69 MiB) Downloaded 155 times
GSE532286480dscrt.txt
(2.67 MiB) Downloaded 156 times
GSE532286480avg.txt
(6.88 MiB) Downloaded 166 times
GSE532286480aftexcel.txt
(12.01 MiB) Downloaded 149 times
sbainazeersheikh
 
Posts: 7
Joined: Sun Jun 24, 2018 4:27 pm

Re: GEO Microarray Data Cleaning

Postby sbainazeersheikh » Mon Jul 16, 2018 2:39 pm

Files for GSE42670 - GPL6244
Attachments
GSE426706244aftexcel.txt
(20.96 MiB) Downloaded 169 times
GSE426706244avg.txt
(12.07 MiB) Downloaded 160 times
GSE426706244zscore.txt
(24.21 MiB) Downloaded 146 times
GSE426706244dscrt.txt
(5.63 MiB) Downloaded 157 times
sbainazeersheikh
 
Posts: 7
Joined: Sun Jun 24, 2018 4:27 pm

Re: GEO Microarray Data Cleaning

Postby sbainazeersheikh » Mon Jul 16, 2018 3:30 pm

Files for GSE32374-GPL570
Attachments
GSE32374aftexcel.txt
(16.12 MiB) Downloaded 154 times
GSE32374avg.txt
(8.28 MiB) Downloaded 149 times
GSE32374zscore.txt
(11.97 MiB) Downloaded 154 times
GSE32374dscrt.txt
(2.96 MiB) Downloaded 139 times
sbainazeersheikh
 
Posts: 7
Joined: Sun Jun 24, 2018 4:27 pm

Re: GEO Microarray Data Cleaning

Postby sbainazeersheikh » Tue Jul 17, 2018 9:37 am

Files for GSE13041-GPL8300
Attachments
GSE130418300zscore.txt
(8.31 MiB) Downloaded 159 times
GSE130418300dscrt.txt
(1.98 MiB) Downloaded 150 times
GSE130418300avg.txt
(3.77 MiB) Downloaded 125 times
GSE130418300aftexcel.txt
(6.22 MiB) Downloaded 119 times
sbainazeersheikh
 
Posts: 7
Joined: Sun Jun 24, 2018 4:27 pm

Re: GEO Microarray Data Cleaning

Postby sbainazeersheikh » Tue Jul 17, 2018 10:30 am

Files for GSE56752-GPL6244
Attachments
GSE567526244zscore.txt
(1.98 MiB) Downloaded 75 times
GSE567526244dscrt.txt
(764.12 KiB) Downloaded 95 times
GSE567526244avg.txt
(1.06 MiB) Downloaded 73 times
GSE567526244aftexcel.txt
(1.7 MiB) Downloaded 80 times
sbainazeersheikh
 
Posts: 7
Joined: Sun Jun 24, 2018 4:27 pm

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