SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
GEO Microarray Data Cleaning
Re: GEO Microarray Data Cleaning
by brianlee » Fri Jul 06, 2018 5:54 pm
Files for GSE13041 - GPL96
- Attachments
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GSE13041-96zscore.txt- (47.98 MiB) Downloaded 154 times
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- GSE13041-96dscrt.txt
- (10.85 MiB) Downloaded 161 times
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- GSE13041-96avg.txt
- (32.51 MiB) Downloaded 158 times
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- GSE13041-96aftexcel.txt
- (60.34 MiB) Downloaded 161 times
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 3:20 pm
Re: GEO Microarray Data Cleaning
by brianlee » Fri Jul 06, 2018 7:49 pm
Files for GSE10878 - GPL2879
- Attachments
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- GSE10878-2879zscore.txt
- (16.73 MiB) Downloaded 163 times
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- GSE10878-2879dscrt.txt
- (3.9 MiB) Downloaded 153 times
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- GSE10878-2879avg.txt
- (17.29 MiB) Downloaded 167 times
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- GSE10878-2879aftexcel.txt
- (28.68 MiB) Downloaded 158 times
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 3:20 pm
Re: GEO Microarray Data Cleaning
by brianlee » Fri Jul 06, 2018 9:31 pm
Files for GSE36426
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- GSE36426avg.txt
- (8.31 MiB) Downloaded 165 times
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- GSE36426zscore.txt
- (22.73 MiB) Downloaded 158 times
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- GSE36426dscrt.txt
- (5.31 MiB) Downloaded 163 times
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- GSE36426aftexcel.txt
- (14.27 MiB) Downloaded 153 times
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 3:20 pm
Re: GEO Microarray Data Cleaning
by brianlee » Fri Jul 06, 2018 9:40 pm
Files for GSE56752 - GPL15366
- Attachments
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- GSE56752-15366zscore.txt
- (4.87 KiB) Downloaded 154 times
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- GSE56752-15366dscrt.txt
- (3.93 KiB) Downloaded 157 times
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- GSE56752-15366avg.txt
- (2.31 KiB) Downloaded 182 times
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- GSE56752-15366aftexcel.txt
- (4.55 KiB) Downloaded 152 times
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 3:20 pm
Re: GEO Microarray Data Cleaning
by brianlee » Mon Jul 09, 2018 2:44 pm
When attempting to clean GSE9885 - GPL887, the program generates a clean GPL file, but is followed by error messages. This occurs from step 5 and onward.
- brianlee
- Posts: 15
- Joined: Fri Jun 22, 2018 3:20 pm
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Mon Jul 16, 2018 2:02 pm
Files for GSE53228- GPL6480
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- GSE532286480zscore.txt
- (10.69 MiB) Downloaded 157 times
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- GSE532286480dscrt.txt
- (2.67 MiB) Downloaded 159 times
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- GSE532286480avg.txt
- (6.88 MiB) Downloaded 169 times
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- GSE532286480aftexcel.txt
- (12.01 MiB) Downloaded 152 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 4:27 pm
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Mon Jul 16, 2018 2:39 pm
Files for GSE42670 - GPL6244
- Attachments
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- GSE426706244aftexcel.txt
- (20.96 MiB) Downloaded 172 times
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- GSE426706244avg.txt
- (12.07 MiB) Downloaded 162 times
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- GSE426706244zscore.txt
- (24.21 MiB) Downloaded 149 times
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- GSE426706244dscrt.txt
- (5.63 MiB) Downloaded 160 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 4:27 pm
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Mon Jul 16, 2018 3:30 pm
Files for GSE32374-GPL570
- Attachments
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- GSE32374aftexcel.txt
- (16.12 MiB) Downloaded 157 times
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- GSE32374avg.txt
- (8.28 MiB) Downloaded 152 times
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- GSE32374zscore.txt
- (11.97 MiB) Downloaded 157 times
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- GSE32374dscrt.txt
- (2.96 MiB) Downloaded 142 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 4:27 pm
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 9:37 am
Files for GSE13041-GPL8300
- Attachments
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- GSE130418300zscore.txt
- (8.31 MiB) Downloaded 162 times
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- GSE130418300dscrt.txt
- (1.98 MiB) Downloaded 153 times
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- GSE130418300avg.txt
- (3.77 MiB) Downloaded 128 times
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- GSE130418300aftexcel.txt
- (6.22 MiB) Downloaded 122 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 4:27 pm
Re: GEO Microarray Data Cleaning
by sbainazeersheikh » Tue Jul 17, 2018 10:30 am
Files for GSE56752-GPL6244
- Attachments
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- GSE567526244zscore.txt
- (1.98 MiB) Downloaded 78 times
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- GSE567526244dscrt.txt
- (764.12 KiB) Downloaded 98 times
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- GSE567526244avg.txt
- (1.06 MiB) Downloaded 76 times
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- GSE567526244aftexcel.txt
- (1.7 MiB) Downloaded 83 times
- sbainazeersheikh
- Posts: 7
- Joined: Sun Jun 24, 2018 4:27 pm
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