SMLG (Statistical Machine Learning Group) Discussion Forum
Changwon Yoo, S.M., Ph.D., PI
Brain Tumor GEO data-Ncbi
14 posts
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Re: Brain Tumor GEO data-Ncbi
by ktchi001 » Thu Apr 13, 2017 1:43 pm
These are the files downloaded from cBioPortal. I have combined the two files Lauren posted here and will post that file when I incorporate these.
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neuroblastoma_broad_nat genet 2013.xlsx- (14.68 KiB) Downloaded 4262 times
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- neuroblastoma_AMC Amersterdam_nature 2012.xlsx
- (18.82 KiB) Downloaded 4990 times
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- medulloblastoma_PCGP_nature 2012.xlsx
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- medulloblastoma_ICGC_nature 2012.xlsx
- (21.53 KiB) Downloaded 4239 times
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- medulloblastoma_broad_nature 2012.xlsx
- (13.28 KiB) Downloaded 4249 times
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- low-grade gliomas_UCSF_science 2014.xlsx
- (15.27 KiB) Downloaded 4354 times
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- glioblastoma_TCGA_nature 2008.xlsx
- (35.35 KiB) Downloaded 4315 times
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- glioblastoma_TCGA_cell 2013.xlsx
- (75.63 KiB) Downloaded 4309 times
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- glioblastoma multiforme_TCGA_Provisional.xlsx
- (245.86 KiB) Downloaded 4699 times
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- brain lower grade glioma_TCGA_provisional.xlsx
- (291.07 KiB) Downloaded 4342 times
- ktchi001
- Posts: 5
- Joined: Thu Oct 20, 2016 4:37 pm
Re: Brain Tumor GEO data-Ncbi
by ktchi001 » Tue Apr 25, 2017 11:55 am
Updated brain tumor list
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- USA Brain Tumor .xlsx
- (49.5 KiB) Downloaded 4426 times
- ktchi001
- Posts: 5
- Joined: Thu Oct 20, 2016 4:37 pm
Re: Brain Tumor GEO data-Ncbi
by stefmoore » Fri Jul 14, 2017 7:41 pm
Per Dr. Yoo's request, attached is the current list of brain tumor datasets as of 14Jul2017. We are in the process of adding "Experiment Type," "Sample Type," and "Study Type" columns for each dataset as well as adding new datasets to the list.
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- Brain Tumor Updates 14Jul2017.xlsx
- (88.91 KiB) Downloaded 4338 times
- stefmoore
- Posts: 6
- Joined: Mon Aug 08, 2016 2:11 pm
Re: Brain Tumor GEO data-Ncbi
by lsand039 » Mon Jul 24, 2017 2:30 pm
Here's a more updated list of results for the GEO search of "Brain Tumor". The Non-GEO studies from the Tue Apr 25, 2017 list are place in its own tab.
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- USA Brain Tumor .xlsx
- (43.57 KiB) Downloaded 4284 times
- lsand039
- Posts: 237
- Joined: Thu Jan 14, 2016 12:17 pm
14 posts
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