by Hamza » Tue Apr 11, 2017 12:00 pm
I used PAH associated genes pathways' from literature. Also, I used the list of genes I had earlier (ID3 correlated& PAH associated from GEO datasets) to find out pathways associated with the gene list. Then, I matched the genes in the common pathways both sides, and I got 30genes common in Blood samples, and 18 genes common on Tissue samples.
I run Bene with 18 genes and I got the network attached. However, with Blood samples 30 genes I didn't get any results so far. It is still running for 2 days now. I also run another terminals for 29, 28,27, and 26 genes to see if there is an issue with number of variables.
I run 25 variables and I gor the results as well.