GEO datasets

[lsand039]

Best scores for BR, Sex, APP, and PSEN1:

Files (90.36%):

settingsBR.Sex.APP.2.PSEN1.txt

(5.88 KiB) Downloaded 284 times

BR.Sex.APP.->.PSEN1.graph.2017.11.07.09.16.18.txt

(340 Bytes) Downloaded 303 times

BR.Sex.APP.->.PSEN1.static.report.2017.11.07.09.16.18.txt

(8.92 KiB) Downloaded 297 times

Files (9.64%):

settingsBR.Sex.PSEN1.1.APP.txt

(5.85 KiB) Downloaded 279 times

BR.Sex.PSEN1.->.APP.graph.2017.11.18.09.22.51.txt

(340 Bytes) Downloaded 273 times

BR.Sex.PSEN1.->.APP.static.report.2017.11.18.09.22.51.txt

(8.88 KiB) Downloaded 288 times

Data file:

BR.Sex.APP.PSEN1.txt

(17.64 KiB) Downloaded 271 times

[lsand039]

Best score for BR, Sex, APP, and PSEN2:

99.66%

BR.Sex.APP.PSEN2.png (27.63 KiB) Viewed 477914 times

Output files:

BR.Sex.APP.->.PSEN2.graph.2017.11.07.09.21.20.txt

(340 Bytes) Downloaded 287 times

BR.Sex.APP.->.PSEN2.static.report.2017.11.07.09.21.20.txt

(8.92 KiB) Downloaded 301 times

Input files:

settingsBR.Sex.APP.2.PSEN2.txt

(5.88 KiB) Downloaded 296 times

BR.Sex.APP.->.PSEN2.txt

data file

(17 Bytes) Downloaded 293 times

[lsand039]

Best score for BR, Sex, PSEN1, and PSEN2:

BR.Sex.PSEN1.PSEN2.png (29.3 KiB) Viewed 477914 times

Output files:

BR.Sex.PSEN1.->.PSEN2.graph.2017.11.07.09.26.22.txt

(344 Bytes) Downloaded 295 times

BR.Sex.PSEN1.->.PSEN2.static.report.2017.11.07.09.26.22.txt

(8.92 KiB) Downloaded 297 times

Input files:

settingsBR.Sex.PSEN1.2.PSEN2.txt

(5.9 KiB) Downloaded 276 times

BR.Sex.PSEN1.PSEN2.txt

data file

(17.64 KiB) Downloaded 322 times

[lsand039]

This is my latest version of methods & results.

Methods.docx

12/14/17

(667.41 KiB) Downloaded 316 times

Results2.docx

12/14/17

(1.78 MiB) Downloaded 319 times

Still need to fix a lot of the formatting, but this is the content I have so far.
I'll continue editing it and posting the newest versions here, but you can also follow my progress with these links:
Results: https://1drv.ms/w/s!AkaTNPVSS2G6mGo4Ivp8CMGlzkMJ
Methods: https://1drv.ms/w/s!AkaTNPVSS2G6mDfAlJFOaWiO5aEo

[lsand039]

Efrain's code to find the path between 2 genes

[lsand039]

The tab "Order" has the scores from Efrain's Ordering code.

[lsand039]

Hi everyone,

I'm currently finishing up my dietetic internship to become a registered dietitian (RD) at Greensboro, NC and hopefully starting a job as an RD or researcher. I'm not sure what my schedule will look like in the near future, but I would love to help continue the Alzheimer's project. I have a draft of what I've done as of December 2017 that could use some review. Please let me know what I can do.

You can reach me at my FIU email: lsand039@fiu.edu (preferred) or sdlauren@hotmail.com.

Thanks,

Lauren San Diego

[cpere117]

Dear all,

I thought since I was also conducting a GEO search on Alzheimers Disease datasets for DNA microarray and RNA-Seq analysis, that I'd contribute to this thread. Excellent job so far collecting these valuable datasets for Alzheimers trancriptomic analysis, I've found a few new and old datasets we can utilize for our research. I've attached them to a txt file for your own perusal. Thank you again, and let me know if you have any questions.

[cwyoo]

Dear all,

I thought since I was also conducting a GEO search on Alzheimers Disease datasets for DNA microarray and RNA-Seq analysis, that I'd contribute to this thread. Excellent job so far collecting these valuable datasets for Alzheimers trancriptomic analysis, I've found a few new and old datasets we can utilize for our research. I've attached them to a txt file for your own perusal. Thank you again, and let me know if you have any questions.

Can you update the attached table by making sure the listed datasets are indeed all Microarray datasets and add RNAseq datasets to the table and upload it. Also please update the "Note" column by stating whether the datasets include any other demographic information in it. If so, please indicate it with number of cases, e.g., if Sex is included, you may state "Sex (M=13/25, F=34/29)" indicating there is Sex information with male 13 AD cases and 25 control cases/ female 34 AD cases and 29 control cases.

[cpere117]

Here is an updated table of my GEO datasets.